C.albicans - PathoYeastract

View Consensus in Promoter

Warning! Overlapping consensus sequences found in either strands may not be highlighted correctly!

Standard Name

CDR3

Promoter Sequence

Consensus
CCGTCGG: -438 -437 -436 -435 -434 -433 -432 -431 -430 -429 -428 -427 -426 -425 -424 -423 -422 -421 -420 -419 -418 -417 -416 -415 -414 -413 -412 -411 -410 -409 -408 -407 -406 -405 -404 -403 -402 -401 -400 -399 -398 -397 -396 -395 -394 -393 -392 -391 -390 -389 -388 -387 -386 -385 -384 -383 -382 -381 -380 -379 -378 -377 -376 -375 -374 -373 -372 -371 -370 -369 -368 -367 -366 -365 -364 -363 -362 -361 -360 -359 -358 -357 -356 -355 -354 -353 -352 -351 -350 -349 -348 -347 -346 -345 -344 -343 -342 -341 -340 -339 -338 -337 -336 -335 -334 -333 -332 -331 -330 -329 -328 -327 -326 -325 -324 -323 -322 -321 -320 -319 -318 -317 -316 -315 -314 -313 -312 -311 -310 -309 -308 -307 -306 -305 -304 -303 -302 -301 -300 -299 -298 -297 -296 -295 -294 -293 -292 -291 -290 -289 -288 -287 -286 -285 -284 -283 -282 -281 -280 -279 -278 -277 -276 -275 -274 -273 -272 -271 -270 -269 -268 -267 -266 -265 -264 -263 -262 -261 -260 -259 -258 -257 -256 -255 -254 -253 -252 -251 -250 -249 -248 -247 -246 -245 -244 -243 -242 -241 -240 -239 -238 -237 -236 -235 -234 -233 -232 -231 -230 -229 -228 -227 -226 -225 -224 -223 -222 -221 -220 -219 -218 -217 -216 -215 -214 -213 -212 -211 -210 -209 -208 -207 -206 -205 -204 -203 -202 -201 -200 -199 -198 -197 -196 -195 -194 -193 -192 -191 -190 -189 -188 -187 -186 -185 -184 -183 -182 -181 -180 -179 -178 -177

>CDR3    upstream sequence, from -1000 to -1, size 1000
CATATTCTTATTTGGTACAACCATATTTTTCGTTCAAACCAACAAATCAAGTATTCTGAA
AGGTGAAACTTTGGTGTTTAGAAGGAAAAATATTAGGAAAATGCGGAAAATGGAGGAGGA
TGAAGAAGCCTATATGGATGGTATGGCGCCATTAGATTTTAGTGGTAGTACGGAAATATC
TGATTATTCTTATGACTATATGGATCGCAAATTATTGGACACTTCGAATATTTTCCATTG
GAGAAACTTGACTTATACTGTTAAAATCAAGTCTGAAGAACGTGTTATTCTTAACAATAT
TGATGGTTGGGTCAAACCTGGTGAAGTCACTGCATTAATGGGTGCATCGGGTGCTGGTAA
AACCACCTTATTAAATGCCTTGTCGGAAAGATTGACCACTGGTGTGATTACTTCAGGAAC
CAGAATGGTGAATGGTGGTGAATTGGATAGTTCTTTCCAAAGATCTATTGGATATGTTCA
ACAACAAGATTTACATTTAGAGACATCTACTGTTCGTGAAGCTTTGAAATTTTCTGCTCG
TTTACGTCAGCCTAATTCTGTGNNNNNNN</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N<br/>an>Nan>Nan>Nan>Nan>NN</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N<br/>an>Nan>Nan>Nan>Nan>NN</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N<br/>an>Nan>Nan>Nan>Nan>NN</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N<br/>an>Nan>Nan>Nan>Nan>NN</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>NTTCATCAGCC
ATCTGCTATCTTGTTAGAAGAATTTGATCGTTTATTGTTGTTGCAAAAGGGAGAAACTGT
TTATTTTGGTGAATTTGGGGCTAATTGTCATACATTGATTGAGTATTTTGAAAGAAATGG
TGCTAGTAAATGTCCACAACATGCCAATCCTGCTGAGTGG

Promoter Sequence
Complementary Strand

Consensus
CCGTCGG: -170 -171 -172 -173 -174 -175 -176 -177 -178 -179 -180 -181 -182 -183 -184 -185 -186 -187 -188 -189 -190 -191 -192 -193 -194 -195 -196 -197 -198 -199 -200 -201 -202 -203 -204 -205 -206 -207 -208 -209 -210 -211 -212 -213 -214 -215 -216 -217 -218 -219 -220 -221 -222 -223 -224 -225 -226 -227 -228 -229 -230 -231 -232 -233 -234 -235 -236 -237 -238 -239 -240 -241 -242 -243 -244 -245 -246 -247 -248 -249 -250 -251 -252 -253 -254 -255 -256 -257 -258 -259 -260 -261 -262 -263 -264 -265 -266 -267 -268 -269 -270 -271 -272 -273 -274 -275 -276 -277 -278 -279 -280 -281 -282 -283 -284 -285 -286 -287 -288 -289 -290 -291 -292 -293 -294 -295 -296 -297 -298 -299 -300 -301 -302 -303 -304 -305 -306 -307 -308 -309 -310 -311 -312 -313 -314 -315 -316 -317 -318 -319 -320 -321 -322 -323 -324 -325 -326 -327 -328 -329 -330 -331 -332 -333 -334 -335 -336 -337 -338 -339 -340 -341 -342 -343 -344 -345 -346 -347 -348 -349 -350 -351 -352 -353 -354 -355 -356 -357 -358 -359 -360 -361 -362 -363 -364 -365 -366 -367 -368 -369 -370 -371 -372 -373 -374 -375 -376 -377 -378 -379 -380 -381 -382 -383 -384 -385 -386 -387 -388 -389 -390 -391 -392 -393 -394 -395 -396 -397 -398 -399 -400 -401 -402 -403 -404 -405 -406 -407 -408 -409 -410 -411 -412 -413 -414 -415 -416 -417 -418 -419 -420 -421 -422 -423 -424 -425 -426 -427 -428 -429 -430 -431

>CDR3	Upstream Sequence Complementary Strand
GTATAAGAATAAACCATGTTGGTATAAAAAGCAAGTTTGGTTGTTTAGTTCATAAGACTT
TCCACTTTGAAACCACAAATCTTCCTTTTTATAATCCTTTTACGCCTTTTACCTCCTCCT
ACTTCTTCGGATATACCTACCATACCGCGGTAATCTAAAATCACCATCATGCCTTTATAG
ACTAATAAGAATACTGATATACCTAGCGTTTAATAACCTGTGAAGCTTATAAAAGGTAAC
CTCTTTGAACTGAATATGACAATTTTAGTTCAGACTTCTTGCACAATAAGAATTGTTATA
ACTACCAACCCAGTTTGGACCACTTCAGTGACGTAATTACCCACGTAGCCCACGACCATT
TTGGTGGAATAATTTACGGAACAGCCTTTCTAACTGGTGACCACACTAATGAAGTCCTTG
GTCTTACCACTTACCACCACTTAACCTATCAAGAAAGGTTTCTAGATAACCTATACAAGT
TGTTGTTCTAAATGTAAATCTCTGTAGATGACAAGCACTTCGAAACTTTAAAAGACGAGC
AAATGCAGTCGGATTAAGACACNNNNNNN</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N<br/>an>Nan>Nan>Nan>Nan>NN</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N<br/>an>Nan>Nan>Nan>Nan>NN</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N<br/>an>Nan>Nan>Nan>Nan>NN</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N<br/>an>Nan>Nan>Nan>Nan>NN</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>NAAGTAGTCGG
TAGACGATAGAACAATCTTCTTAAACTAGCAAATAACAACAACGTTTTCCCTCTTTGACA
AATAAAACCACTTAAACCCCGATTAACAGTATGTAACTAACTCATAAAACTTTCTTTACC
ACGATCATTTACAGGTGTTGTACGGTTAGGACGACTCACC