PathoYeastract
C.albicans
YEASTRACT+
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Modelling prediction
Fitness-linked TFs (quant.)
Fitness-linked TFs (qual.)
[metab] optimizing TF
Strain selection (quant.)
Strain selection (qual.)
Cross species
Promoter analysis
Homologous network
Network comparison
Rank by Unique TFBS
Rank genes
Rank by TF (quant.)
Rank by TF (qual.)
Rank by GO
Regulatory Associations
Search for TFs
Search for Genes
Search for Associations
Pattern Matching
Search by DNA Motif
Find TF Binding Site(s)
Utilities
Search for Orthologs
IUPAC Code Generation
ORF List ⇔ Gene List
Retrieve
TF-Consensus List
Regulation Matrix
Upstream Sequence
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Acknowledgments
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Regulation Reference(s)
The PathoYeastract team, is actively curating each regulation evidence code, association type and environmental condition.
Transcription
Factor
Target
ORF/Genes
References
Evidence
Code
Evidence
Experiment
Association
Type
Strain
Environmental
Group
Environmental
Condition
Log2FC
Rtg3p
C2_10660W_A
PubMed
Moreno-Velásquez SD et al., Cell reports, 2020 Jan 21;30(3):620-629.e6
Moreno-Velásquez SD et al., Cell reports, 2020 Jan 21;30(3):620-629.e6
Indirect
RNA-seq analysis - WT vs TF Deletion
Negative
SN152
Unstressed log-phase growth (control)
Grown in liquid YPD medium at 37°C for 2 hours. Transcription factor gene deletion.
-0.858341975063904
Indirect
RNA-seq analysis - WT vs TF Deletion
Positive
SN152
Stress
Grown in liquid YPD medium at 37°C for 2 hours in the presence of myriocin. Transcription factor gene deletion.
0.381331229451795
Indirect
RNA-seq analysis - WT vs TF Deletion
Negative
SN152
Stress
Grown in liquid YPD medium at 37°C for 2 hours in the presence of caffeine. Transcription factor gene deletion.
-2.25198038120041