C.albicans - PathoYeastract

View Consensus in Promoter

Warning! Overlapping consensus sequences found in either strands may not be highlighted correctly!

Standard Name

CPH1

Promoter Sequence

Consensus
CCGTCGG: -677 -676 -675 -674 -631 -630 -629 -628 -627 -626 -625 -624 -623 -622 -621 -620 -619 -618 -617 -616 -615 -614 -613 -612 -611 -610 -609

>CPH1    upstream sequence, from -1000 to -1, size 1000
TAGTTCTTGTTGTTATTTCGGTTAAAATTATTGAAATTAATCTAGAATCATCAAATTCTA
ACAACAACTACATAATACCAGAAGAAAAACGTCAAAGAGAATTTATAGTTGTATCAATTT
AGATTTGGATTTACAATTTTATTATTCTTCAATTCTCGATTTCCTCGTGAAGTTTTTTGT
TTTAGTTGTTTTTGTTTTTGTTTTTGTTTCCCCATTGACACGAAAAAGTTTTCCTTAAAA
AAAGAGAAAAATTTCCTAGAACCAACTAAACATTCTTGCTTTACATTATCTTCATTTTAA
TTTGTTGGTGTTGTTGTAAATCANNNNNNN</span>N</span>N</span>GTGGGTTGTTTTGTTTTAAACTTTTAAT
ACATCAAAANNNNNNN</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>GATTTTTTCTTTACAAGTTTCAT
ATATTTTTATAACTAAAGAAAGAAGGTTGGAAGATCTAACAAATTTTTTTTGTTCCCCGT
TAACCGAAACACACATACATATACTTCTGTCCACACACACACTACCACAAATTTTTGAGT
TGATTTCAAACAAGGGTTTTAGAATTTTCCGATTTGTTTTGGTCTTAGTTTTAGCTTGAC
AATCAAAAAAGAATTACAAAACATCGAACAACCTTCGACCTTCCCCCCACACTCGTTCCC
CCTCTCCTTGCCTCGAGTACACTTCACACCTCAGATCTCATTAACATAACGTCCTATATT
GCCAAGCAATTTTACTACGACAAATTCAATCATTAGGGCTATTTTGACACTTTGAATTAC
AATTTTATATCAGTGTCGCATTATTACTATTTCCATTTTCAACAAAGTATTGGATATAAC
ACGTTTCTATCAATCATTACCAACCTGACCAACAGAGTATCCATTAATTCTTAGTTAAAT
ATATTTCTTTTCACTTTTTTCACTTTTTTCATTTTTCAATTGTTGTGCCCCCCCCTCGTT
GCGGATCAAATAATATAACTGCCTAATACACTCTTTCGCC

Promoter Sequence
Complementary Strand

Consensus
CCGTCGG: -602 -603 -604 -605 -606 -607 -608 -609 -610 -611 -612 -613 -614 -615 -616 -617 -618 -619 -620 -621 -622 -623 -624 -667 -668 -669 -670

>CPH1	Upstream Sequence Complementary Strand
ATCAAGAACAACAATAAAGCCAATTTTAATAACTTTAATTAGATCTTAGTAGTTTAAGAT
TGTTGTTGATGTATTATGGTCTTCTTTTTGCAGTTTCTCTTAAATATCAACATAGTTAAA
TCTAAACCTAAATGTTAAAATAATAAGAAGTTAAGAGCTAAAGGAGCACTTCAAAAAACA
AAATCAACAAAAACAAAAACAAAAACAAAGGGGTAACTGTGCTTTTTCAAAAGGAATTTT
TTTCTCTTTTTAAAGGATCTTGGTTGATTTGTAAGAACGAAATGTAATAGAAGTAAAATT
AAACAACCACAACAACATTTAGTNNNNNNN</span>N</span>N</span>CACCCAACAAAACAAAATTTGAAAATTA
TGTAGTTTTNNNNNNN</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>CTAAAAAAGAAATGTTCAAAGTA
TATAAAAATATTGATTTCTTTCTTCCAACCTTCTAGATTGTTTAAAAAAAACAAGGGGCA
ATTGGCTTTGTGTGTATGTATATGAAGACAGGTGTGTGTGTGATGGTGTTTAAAAACTCA
ACTAAAGTTTGTTCCCAAAATCTTAAAAGGCTAAACAAAACCAGAATCAAAATCGAACTG
TTAGTTTTTTCTTAATGTTTTGTAGCTTGTTGGAAGCTGGAAGGGGGGTGTGAGCAAGGG
GGAGAGGAACGGAGCTCATGTGAAGTGTGGAGTCTAGAGTAATTGTATTGCAGGATATAA
CGGTTCGTTAAAATGATGCTGTTTAAGTTAGTAATCCCGATAAAACTGTGAAACTTAATG
TTAAAATATAGTCACAGCGTAATAATGATAAAGGTAAAAGTTGTTTCATAACCTATATTG
TGCAAAGATAGTTAGTAATGGTTGGACTGGTTGTCTCATAGGTAATTAAGAATCAATTTA
TATAAAGAAAAGTGAAAAAAGTGAAAAAAGTAAAAAGTTAACAACACGGGGGGGGAGCAA
CGCCTAGTTTATTATATTGACGGATTATGTGAGAAAGCGG