C.albicans - PathoYeastract

View Consensus in Promoter

Warning! Overlapping consensus sequences found in either strands may not be highlighted correctly!

Standard Name

PGA39

Promoter Sequence

Consensus
CCGTCGG: -266 -265 -264 -263 -262 -261 -260 -259 -258 -257 -256 -255 -254 -253 -252 -251 -250 -249 -248 -247 -246 -245 -244 -243 -242 -241 -240 -239 -238 -237 -236 -235 -234 -233 -232 -231 -230 -229 -228 -227 -226 -225 -224 -223 -222 -221 -220 -219 -218 -217 -216 -215 -214 -213 -212 -211 -210 -209 -208 -207 -206 -205 -204 -203 -202 -201 -200 -199 -198 -197 -196 -195 -194 -193 -192 -191 -190 -189 -188 -187 -186 -185 -184 -183 -182 -181 -180 -179 -178 -177 -176 -175 -174 -173 -172 -171 -170 -169 -168 -167 -166 -165 -164 -163 -162 -161 -160 -159 -158 -157 -156 -155 -154 -153 -152 -151 -150 -149 -148 -147 -146 -145 -144 -143 -142 -141 -140 -139 -138 -137 -136 -135 -134 -133 -132 -131 -130 -129 -128 -127 -126 -125 -124 -123 -122

>PGA39    upstream sequence, from -1000 to -1, size 1000
CTCAAAAAACCCAAAGCAAAAGTCTCGAGTGGAAAGCTTAATATTAATTTTTCCAAAAAA
AAAAAAAATAACAACTATTTCAGTATTCATAGTTGATTGAACAATATAGGTCTAGTAATA
GTAATAGATATTAACGCGTTACAACGTGGGTTAATAATGCTTCACACTTTGGTTCATTAA
ATGGATGCAAAAAAATAGACAAGTTAAGTCGCGGACACAGGTACTACTACAAAAATTAGT
CTTACTGGTATGTATTATGAACACACATCGGTAATATCCAACAATATCACTAACAAGTTT
AATCACCGTTTAAAATCAATACAGGAGGTGTCATAAACTAATAGACAAAAATTATTTATT
CAATTGTTTTTGCAAATTGAAAGTATACTTTAGACGGTCAACCAGCACTGCCTCTTCTTA
TAAACAAATCAAATTTTCTCCACAGTTTTCTTTTTCTTCTTCTTCTTTCTTTCTTTCTTT
TATATTGACACAAGTCAAAAAATTTAGGGTGGTGGTGGTGGTGGTAGATGATACTGAAAC
TCACAATACTTTTGAAAAATGAAAAGTTTAAAAATTGAAACATTATACCCTTAGTCCTTT
TTTTTTAAGGACAATTTATATTGTAACTTTAAATATTGACCAACAAGTATATTATTATTA
TTATTATTGTGTGGAAAAAAAAAAAAAAAAATTGTGGTTGAAAAATAAATATGGATGCAA
AAACAATATATACTCNNNNNN</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N<br/>an>Nan>Nan>Nan>Nan>NN</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N<br/>an>Nan>Nan>Nan>Nan>NN</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>GACATCAAAACTTTTC
CATTTGTTTTCCATTTCTTCTTCTTCTTCTTCTTATTATTATTCTGTTAATTCAAATTTT
CAATCTCTTTACTTTTTACTTCAAAAAATTTTTTTACCCA

Promoter Sequence
Complementary Strand

Consensus
CCGTCGG: -115 -116 -117 -118 -119 -120 -121 -122 -123 -124 -125 -126 -127 -128 -129 -130 -131 -132 -133 -134 -135 -136 -137 -138 -139 -140 -141 -142 -143 -144 -145 -146 -147 -148 -149 -150 -151 -152 -153 -154 -155 -156 -157 -158 -159 -160 -161 -162 -163 -164 -165 -166 -167 -168 -169 -170 -171 -172 -173 -174 -175 -176 -177 -178 -179 -180 -181 -182 -183 -184 -185 -186 -187 -188 -189 -190 -191 -192 -193 -194 -195 -196 -197 -198 -199 -200 -201 -202 -203 -204 -205 -206 -207 -208 -209 -210 -211 -212 -213 -214 -215 -216 -217 -218 -219 -220 -221 -222 -223 -224 -225 -226 -227 -228 -229 -230 -231 -232 -233 -234 -235 -236 -237 -238 -239 -240 -241 -242 -243 -244 -245 -246 -247 -248 -249 -250 -251 -252 -253 -254 -255 -256 -257 -258 -259

>PGA39	Upstream Sequence Complementary Strand
GAGTTTTTTGGGTTTCGTTTTCAGAGCTCACCTTTCGAATTATAATTAAAAAGGTTTTTT
TTTTTTTTATTGTTGATAAAGTCATAAGTATCAACTAACTTGTTATATCCAGATCATTAT
CATTATCTATAATTGCGCAATGTTGCACCCAATTATTACGAAGTGTGAAACCAAGTAATT
TACCTACGTTTTTTTATCTGTTCAATTCAGCGCCTGTGTCCATGATGATGTTTTTAATCA
GAATGACCATACATAATACTTGTGTGTAGCCATTATAGGTTGTTATAGTGATTGTTCAAA
TTAGTGGCAAATTTTAGTTATGTCCTCCACAGTATTTGATTATCTGTTTTTAATAAATAA
GTTAACAAAAACGTTTAACTTTCATATGAAATCTGCCAGTTGGTCGTGACGGAGAAGAAT
ATTTGTTTAGTTTAAAAGAGGTGTCAAAAGAAAAAGAAGAAGAAGAAAGAAAGAAAGAAA
ATATAACTGTGTTCAGTTTTTTAAATCCCACCACCACCACCACCATCTACTATGACTTTG
AGTGTTATGAAAACTTTTTACTTTTCAAATTTTTAACTTTGTAATATGGGAATCAGGAAA
AAAAAATTCCTGTTAAATATAACATTGAAATTTATAACTGGTTGTTCATATAATAATAAT
AATAATAACACACCTTTTTTTTTTTTTTTTTAACACCAACTTTTTATTTATACCTACGTT
TTTGTTATATATGAGNNNNNN</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N<br/>an>Nan>Nan>Nan>Nan>NN</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N<br/>an>Nan>Nan>Nan>Nan>NN</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>N</span>CTGTAGTTTTGAAAAG
GTAAACAAAAGGTAAAGAAGAAGAAGAAGAAGAATAATAATAAGACAATTAAGTTTAAAA
GTTAGAGAAATGAAAAATGAAGTTTTTTAAAAAAATGGGT