C.tropicalis - PathoYeastract

View Consensus in Promoter

Warning! Overlapping consensus sequences found in either strands may not be highlighted correctly!

Standard Name

CTRG_01468

Promoter Sequence

Consensus
TKYWKHTKKTKHTTTTTKTTKYTTTKWTT: -186 -185 -184 -183 -182 -181 -180 -179 -178 -177 -176 -175 -174 -173 -172 -171 -170 -169 -168 -167 -166 -165 -164 -163 -162 -161 -160 -159 -158 -157 -156 -155 -154 -153 -152 -151 -150 -149 -148 -147 -146 -145 -144 -143 -142 -141 -140 -139 -138 -137 -136 -135 -134 -133 -132 -131 -130 -129 -128 -127 -126 -125 -124 -123 -122 -121 -120 -119 -118 -117 -116 -115 -114 -113 -112 -111 -110 -109 -108 -107 -106 -105 -104 -103 -102 -101 -100 -99 -98 -97 -96 -95 -94 -93 -92 -91 -90 -89 -88 -87 -86 -85 -84 -83

>CTRG_01468    upstream sequence, from -1000 to -1, size 1000
AAAAAGAAAATTTTTTATTTCTTTAATTTTCTGCACCAATATCAATATCATCATCGATTG
TGAAAAAAAAAAGGAAAAAACACTCAAGCCACGTCAGAATAAACCTTTATAAAAGAATGT
CCTCGGATAGAAACCAAGGTATTAGATTACCTCCAATATCATTCTTGTCTTCCTCAGCTT
CACCACCTACTCAACCAGCTCAACTACCACCGCCGCCGCAGCAACGGAATAAATTGTCAC
CACCAACAAGCTTGGGCATTCACAATTTTCTAAATAATCCAATACCAAATGCTCAACCTC
AATCATCAGCCACTTCTTCATTGTCACCTCCACAATCCCATGGTGATCAACATGTAAATA
AAAAAATAAAAACTTCAGCATCTCCACAATTGATCCACTCATCAGTCTCACCACCAAATC
AGCATCAACAAGCACCACAAGAAGAAAAACAATATGTTTTGCCCAAAATTAATCAAATAA
CACAACATTCCCAACAGGAACTTCGACAAACATCACCCCCGCTCCCACAACATCAACAAG
TATATCAGGTACAACAAAGTTATTCCCCACCTGCAACCTCAACCTCAGAACAACAATCTC
CACAGCCACCTACACCTCAACAGCAACAACAACTACAACAGGAACCGGTATTACATCACC
ATCATCATCACCACCATCACAATAATAATAATAATAATAATAATAATAATAACAGTAACA
AAGCATCATCACCATCATCACCACCACCATCATCATCACTCTATCGATCATCATAATCAA
CAACAAGATCTGAAACCAAAATCAAAACCTCAAGNNNNNNNNNNNNNNNNNNNNNNNNNN
NNN>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>NNpan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>N/>>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>NNpan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>NNNNCCACAGTCAAGTCA
GATATATCCTACTATCCCCCATTACCTTCAGATTATATCA

Promoter Sequence
Complementary Strand

Consensus
TKYWKHTKKTKHTTTTTKTTKYTTTKWTT: -54 -55 -56 -57 -58 -59 -60 -61 -62 -63 -64 -65 -66 -67 -68 -69 -70 -71 -72 -73 -74 -75 -76 -77 -78 -79 -80 -81 -82 -83 -84 -85 -86 -87 -88 -89 -90 -91 -92 -93 -94 -95 -96 -97 -98 -99 -100 -101 -102 -103 -104 -105 -106 -107 -108 -109 -110 -111 -112 -113 -114 -115 -116 -117 -118 -119 -120 -121 -122 -123 -124 -125 -126 -127 -128 -129 -130 -131 -132 -133 -134 -135 -136 -137 -138 -139 -140 -141 -142 -143 -144 -145 -146 -147 -148 -149 -150 -151 -152 -153 -154 -155 -156 -157

>CTRG_01468	Upstream Sequence Complementary Strand
TTTTTCTTTTAAAAAATAAAGAAATTAAAAGACGTGGTTATAGTTATAGTAGTAGCTAAC
ACTTTTTTTTTTCCTTTTTTGTGAGTTCGGTGCAGTCTTATTTGGAAATATTTTCTTACA
GGAGCCTATCTTTGGTTCCATAATCTAATGGAGGTTATAGTAAGAACAGAAGGAGTCGAA
GTGGTGGATGAGTTGGTCGAGTTGATGGTGGCGGCGGCGTCGTTGCCTTATTTAACAGTG
GTGGTTGTTCGAACCCGTAAGTGTTAAAAGATTTATTAGGTTATGGTTTACGAGTTGGAG
TTAGTAGTCGGTGAAGAAGTAACAGTGGAGGTGTTAGGGTACCACTAGTTGTACATTTAT
TTTTTTATTTTTGAAGTCGTAGAGGTGTTAACTAGGTGAGTAGTCAGAGTGGTGGTTTAG
TCGTAGTTGTTCGTGGTGTTCTTCTTTTTGTTATACAAAACGGGTTTTAATTAGTTTATT
GTGTTGTAAGGGTTGTCCTTGAAGCTGTTTGTAGTGGGGGCGAGGGTGTTGTAGTTGTTC
ATATAGTCCATGTTGTTTCAATAAGGGGTGGACGTTGGAGTTGGAGTCTTGTTGTTAGAG
GTGTCGGTGGATGTGGAGTTGTCGTTGTTGTTGATGTTGTCCTTGGCCATAATGTAGTGG
TAGTAGTAGTGGTGGTAGTGTTATTATTATTATTATTATTATTATTATTATTGTCATTGT
TTCGTAGTAGTGGTAGTAGTGGTGGTGGTAGTAGTAGTGAGATAGCTAGTAGTATTAGTT
GTTGTTCTAGACTTTGGTTTTAGTTTTGGAGTTCNNNNNNNNNNNNNNNNNNNNNNNNNN
NNN>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>NNpan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>N/>>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>NNpan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>NNNNGGTGTCAGTTCAGT
CTATATAGGATGATAGGGGGTAATGGAAGTCTAATATAGT