C.tropicalis - PathoYeastract

View Consensus in Promoter

Warning! Overlapping consensus sequences found in either strands may not be highlighted correctly!

Standard Name

CTRG_02244

Promoter Sequence

Consensus
TKYWKHTKKTKHTTTTTKTTKYTTTKWTT: -683 -682 -681 -680 -679 -678 -677 -676 -675 -674 -673 -672 -671 -670 -669 -668 -667 -666 -665 -664 -663 -662 -661 -660 -659 -658 -657 -656 -655 -654 -653 -652 -651 -650 -649 -648 -647 -646 -645 -644 -643 -642 -641 -640 -639 -638 -637 -636 -635 -634 -633 -632 -631 -630 -629 -628 -627 -626 -625 -624 -623 -622 -621 -620 -619 -618 -617 -616 -615 -614 -613 -612

>CTRG_02244    upstream sequence, from -1000 to -1, size 1000
TTCAATTGATCAATTATTAATAACACAATGGCTCCAGTCGTCCAACAACCAGCTCCATCT
TTCAAAAAAACCGCCGTCGTTGATGGTGCTTTCGAAGAAGTCACTTTGGAACAATACAAA
GGTAAATGGGTCGTTTTGGCTTTCATCCCATTAGCTTTTACTTTTGTCTGTCCATCCGAA
ATCATTGCTTACTCTGATGCTGTCAAGAAGTTTGCTGAAAAAGATGCTCAAGTCTTGTTT
GCTTCTACTGATTCCGAATACACCTGGTTGGCCTGGACCAATGTCGCTAGAAAAGATGGT
GGTATTGGTAAGGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNpan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>N/>>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>NNpan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>NNNNATA
CCAACCACACTTTGTCCAAGGACTACGGTGTCTTGATTGAAGAAGAAGGTGTTGCCTTGA
GAGGTATTTTCTTGATTGATCCAAAGGGTACCTTGAGACAAATCACCATCAATGACTTGC
CAGTCGGTAGATCTGTTGACGAAACCTTGAGATTGTTGGAAGCTTTCCAATTCACTGACA
AATACGGTGAAGTTTGTCCAGCTAACTGGCAACCAGGTGCTGAAACTATCAAACCAACCC
CAGAAGCTTCTAAGGAATACTTCAACAAGGTCAACAAATAAATAAGCTAGCTTGTTTTTG
TTAATGTTATAGATAGTAAGGCTATGTATAGTTGATTTATTTGATATAAATGTATGTATT
TAAGTTATTTAAAAATTGAATATTCACTCAATTGACTGTGGTTCGTATATCCCCCTATTT
TGTTCGTTCCAAAGGAAGTGGTGTAAAACTGCTCATCTTCTGTGGGGGAGGATAGCATCG
GCAACGAGACCAAACAAAGAACATTGAAAAAAAAGAAAAAAGAAATCTGTACCACACAAT
TCCTTTCTTTCATGACTTGATTCATCAATCCAATTTTACG

Promoter Sequence
Complementary Strand

Consensus
TKYWKHTKKTKHTTTTTKTTKYTTTKWTT: -582 -583 -584 -585 -586 -587 -588 -589 -590 -591 -592 -593 -594 -595 -596 -597 -598 -599 -600 -601 -602 -603 -604 -605 -606 -607 -608 -609 -610 -611 -612 -613 -614 -615 -616 -617 -618 -619 -620 -621 -622 -623 -624 -625 -626 -627 -628 -629 -630 -631 -632 -633 -634 -635 -636 -637 -638 -639 -640 -641 -642 -643 -644 -645 -646 -647 -648 -649 -650 -651 -652 -653 -654 -655

>CTRG_02244	Upstream Sequence Complementary Strand
AAGTTAACTAGTTAATAATTATTGTGTTACCGAGGTCAGCAGGTTGTTGGTCGAGGTAGA
AAGTTTTTTTGGCGGCAGCAACTACCACGAAAGCTTCTTCAGTGAAACCTTGTTATGTTT
CCATTTACCCAGCAAAACCGAAAGTAGGGTAATCGAAAATGAAAACAGACAGGTAGGCTT
TAGTAACGAATGAGACTACGACAGTTCTTCAAACGACTTTTTCTACGAGTTCAGAACAAA
CGAAGATGACTAAGGCTTATGTGGACCAACCGGACCTGGTTACAGCGATCTTTTCTACCA
CCATAACCATTCCAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNpan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>N/>>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>NNpan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>NNNTAT
GGTTGGTGTGAAACAGGTTCCTGATGCCACAGAACTAACTTCTTCTTCCACAACGGAACT
CTCCATAAAAGAACTAACTAGGTTTCCCATGGAACTCTGTTTAGTGGTAGTTACTGAACG
GTCAGCCATCTAGACAACTGCTTTGGAACTCTAACAACCTTCGAAAGGTTAAGTGACTGT
TTATGCCACTTCAAACAGGTCGATTGACCGTTGGTCCACGACTTTGATAGTTTGGTTGGG
GTCTTCGAAGATTCCTTATGAAGTTGTTCCAGTTGTTTATTTATTCGATCGAACAAAAAC
AATTACAATATCTATCATTCCGATACATATCAACTAAATAAACTATATTTACATACATAA
ATTCAATAAATTTTTAACTTATAAGTGAGTTAACTGACACCAAGCATATAGGGGGATAAA
ACAAGCAAGGTTTCCTTCACCACATTTTGACGAGTAGAAGACACCCCCTCCTATCGTAGC
CGTTGCTCTGGTTTGTTTCTTGTAACTTTTTTTTCTTTTTTCTTTAGACATGGTGTGTTA
AGGAAAGAAAGTACTGAACTAAGTAGTTAGGTTAAAATGC