C.tropicalis - PathoYeastract

View Consensus in Promoter

Warning! Overlapping consensus sequences found in either strands may not be highlighted correctly!

Standard Name

CTRG_03140

Promoter Sequence

Consensus
TKYWKHTKKTKHTTTTTKTTKYTTTKWTT: -218 -216 -215 -214 -213 -212 -211 -210 -209 -208 -207 -206 -205 -204 -203 -202 -201 -200 -199 -198 -197 -196 -195 -194 -193 -192 -191 -190 -189 -188 -187 -186 -185 -184 -183 -182 -181 -180 -179 -178 -177 -176 -175 -174 -173 -172 -171 -170 -169 -168 -167 -166 -165 -164 -163 -162 -161 -160 -159 -158 -157 -156 -155 -154 -153 -152 -151 -150 -149 -148 -147 -146 -145

>CTRG_03140    upstream sequence, from -1000 to -1, size 1000
TCCGTCTGAATTGATTAATCAAAACTCACTCCCAGATTTATCGCTGCATGCGTCATATGA
AGTTGTTCATGAGACAAGACACAAATTTGTCCCGACAACGGAGTACAACCAGCACATCAA
ATCGAGTTTAAAGCAGATCAATATCCAGTCCAAGTATAATGTTGATGATAATGAATTTAA
GGCCATGGTTACTAATTCTAAAATATTAGCCATCAAAGAATTTGAAGATTGGAATTGGAC
TATTTTATTGAATTTAATCCAAGGTCCCTTGACAAATCCAAAACGATTTGATGAAGTTTT
AGAAAAAGCTCCTAAATTTTTCAAACGGTTGTTGTCGTTCTATCGTCCATTCAAGTACAG
ATTCTCCACTATAACCAACTCTAATAAGAACTGTCTTCGATATATCAATTTTGGATGCCA
GTTGATTGAGATGTTTTTAAATTTAGAGAATGGGATCAAATACTTGAGTAGTAGTAAATT
ATTGCCTCAATTATCGGAAATAGTGGCCCAAATAGATCCATATAGTGGTATTGGGTCAAG
AGATCCTATTTTGAGTAAGAAAAGACTTGACTCAACAGCATCTACTGGGTATATAAGATT
CATTGGTGTGTTGAGTGGACATTGGGCTGGGATTAGAATGCTAGAACAGTGGCAATTTTT
CACATTATTGTTAAACATTGTTGGTTCAACTGCTGATTCAGATACAAACAATTTATTCAT
TTTGACTTTGTTCAAATACGTTGATTTTAGTATTGATTCTCCATTTAGAAATTTGCTCAA
AATGNNNNNNNNNNNNNNNNNNNNNNNNNNNan>NNpan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>N/>>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>NNpan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>NNNNGTGATTTGTTGTATGC
ATTTTTCAAGAATAATAATTTCTTAAACCTTGAATTGCTCATCAAGTTTAAGCCACAAGT
TGAGATATTAGAAAAATATCCATTGGGTAAAAAATTGTTA

Promoter Sequence
Complementary Strand

Consensus
TKYWKHTKKTKHTTTTTKTTKYTTTKWTT: -116 -117 -118 -119 -120 -121 -122 -123 -124 -125 -126 -127 -128 -129 -130 -131 -132 -133 -134 -135 -136 -137 -138 -139 -140 -141 -142 -143 -144 -145 -146 -147 -148 -149 -150 -151 -152 -153 -154 -155 -156 -157 -158 -159 -160 -161 -162 -163 -164 -165 -166 -167 -168 -169 -170 -171 -172 -173 -174 -175 -176 -177 -178 -179 -180 -181 -182 -183 -184 -185 -186 -187

>CTRG_03140	Upstream Sequence Complementary Strand
AGGCAGACTTAACTAATTAGTTTTGAGTGAGGGTCTAAATAGCGACGTACGCAGTATACT
TCAACAAGTACTCTGTTCTGTGTTTAAACAGGGCTGTTGCCTCATGTTGGTCGTGTAGTT
TAGCTCAAATTTCGTCTAGTTATAGGTCAGGTTCATATTACAACTACTATTACTTAAATT
CCGGTACCAATGATTAAGATTTTATAATCGGTAGTTTCTTAAACTTCTAACCTTAACCTG
ATAAAATAACTTAAATTAGGTTCCAGGGAACTGTTTAGGTTTTGCTAAACTACTTCAAAA
TCTTTTTCGAGGATTTAAAAAGTTTGCCAACAACAGCAAGATAGCAGGTAAGTTCATGTC
TAAGAGGTGATATTGGTTGAGATTATTCTTGACAGAAGCTATATAGTTAAAACCTACGGT
CAACTAACTCTACAAAAATTTAAATCTCTTACCCTAGTTTATGAACTCATCATCATTTAA
TAACGGAGTTAATAGCCTTTATCACCGGGTTTATCTAGGTATATCACCATAACCCAGTTC
TCTAGGATAAAACTCATTCTTTTCTGAACTGAGTTGTCGTAGATGACCCATATATTCTAA
GTAACCACACAACTCACCTGTAACCCGACCCTAATCTTACGATCTTGTCACCGTTAAAAA
GTGTAATAACAATTTGTAACAACCAAGTTGACGACTAAGTCTATGTTTGTTAAATAAGTA
AAACTGAAACAAGTTTATGCAACTAAAATCATAACTAAGAGGTAAATCTTTAAACGAGTT
TTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNpan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>N/>>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>NNpan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>NNNNCACTAAACAACATACG
TAAAAAGTTCTTATTATTAAAGAATTTGGAACTTAACGAGTAGTTCAAATTCGGTGTTCA
ACTCTATAATCTTTTTATAGGTAACCCATTTTTTAACAAT