C.tropicalis - PathoYeastract

View Consensus in Promoter

Warning! Overlapping consensus sequences found in either strands may not be highlighted correctly!

Standard Name

CTRG_04001

Promoter Sequence

Consensus
TKYWKHTKKTKHTTTTTKTTKYTTTKWTT: -145 -144 -143 -142 -141 -140 -139 -138 -137 -136 -135 -134 -133 -132 -131 -130 -129 -128 -127 -126 -125 -124 -123 -122 -121 -120 -119 -118 -117 -116 -115 -114 -113 -112 -111 -110 -109 -108 -107 -106 -105 -104 -103 -102 -101 -100 -99 -98 -97 -96 -95 -94 -93 -92 -91 -90 -89 -88 -87 -86 -85 -84 -83 -82 -81 -80 -79 -78 -77 -76 -75 -74

>CTRG_04001    upstream sequence, from -1000 to -1, size 1000
CTTTCAACTTTATCTATTCCTATTTTATTTATTGATCACATATCATAATGTTTTCAACAA
TTAGACAACAAACAAGAGCTTCACGTCGCTCGATAGAACACACTATTAAAAGATTCAATT
CCTCACATCATCATCATCATCATCATCATCATGAACCAGAGTCCAAACCCGTAGAAATAA
CATTTGCCAAAGTATTTGGTGTTGCTGCATTAGCAGGTGGATTTTTAGTTTATAAGAATA
AAGATTCTACTGAGAAACCATTATTTGCTTCTAAATATTTTGATGAAATTACTACTGGCG
AACGTAGTCATTTAAGAGATGAACTGTATGATAGAAAATACAAAGTTGGATTCCTTAAAA
CATTCGATAGAGATAATAGTGGATTAGGTGAACAATTGAAGAAAACTGGTAGTGTTTATG
AATTACCGAATTACAATTTAATTCCAGCCCATTCTCCATTCGGATACCAATTTGGTGCTG
GGATTAGAACTCAAGAATTAGGACCAAGAAGAGAAAGAGAAAGACGTTTTTAAGTCAATT
GAAGTCAAAGGTGTATATTCTATTTTTGATAAATACAGCGTATATTTAATACTAATATCA
GGTTACAGAACTATAGAGTTAAGCATTGAGTGTATTAGCCCCGGGGTTATGACCACTTAT
TTCTAATAAACGTTTGCATAGTAGTAGTCTTAGCATGAATTGTGTAGTGTCAGTTGCTAA
ATCAACTCTGAACATGGTAATTTTGAATGGTTTCTATAAAAATCATCTACACTGTCGTAT
ATTTTCTCCAACTCCTTTAATATTATTTTTTTACATCAATTTCCTCGCAAAATTTGGATC
CAAAAAAAAGAGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNpan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>N/>>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>NNpan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>NNNNACCAC
CACATTCTCCATATTTGTGACTCTTTCTCGTTCTGAAAGA

Promoter Sequence
Complementary Strand

Consensus
TKYWKHTKKTKHTTTTTKTTKYTTTKWTT: -44 -45 -46 -47 -48 -49 -50 -51 -52 -53 -54 -55 -56 -57 -58 -59 -60 -61 -62 -63 -64 -65 -66 -67 -68 -69 -70 -71 -72 -73 -74 -75 -76 -77 -78 -79 -80 -81 -82 -83 -84 -85 -86 -87 -88 -89 -90 -91 -92 -93 -94 -95 -96 -97 -98 -99 -100 -101 -102 -103 -104 -105 -106 -107 -108 -109 -110 -111 -112 -113 -114 -115 -116 -117 -118 -119

>CTRG_04001	Upstream Sequence Complementary Strand
GAAAGTTGAAATAGATAAGGATAAAATAAATAACTAGTGTATAGTATTACAAAAGTTGTT
AATCTGTTGTTTGTTCTCGAAGTGCAGCGAGCTATCTTGTGTGATAATTTTCTAAGTTAA
GGAGTGTAGTAGTAGTAGTAGTAGTAGTAGTACTTGGTCTCAGGTTTGGGCATCTTTATT
GTAAACGGTTTCATAAACCACAACGACGTAATCGTCCACCTAAAAATCAAATATTCTTAT
TTCTAAGATGACTCTTTGGTAATAAACGAAGATTTATAAAACTACTTTAATGATGACCGC
TTGCATCAGTAAATTCTCTACTTGACATACTATCTTTTATGTTTCAACCTAAGGAATTTT
GTAAGCTATCTCTATTATCACCTAATCCACTTGTTAACTTCTTTTGACCATCACAAATAC
TTAATGGCTTAATGTTAAATTAAGGTCGGGTAAGAGGTAAGCCTATGGTTAAACCACGAC
CCTAATCTTGAGTTCTTAATCCTGGTTCTTCTCTTTCTCTTTCTGCAAAAATTCAGTTAA
CTTCAGTTTCCACATATAAGATAAAAACTATTTATGTCGCATATAAATTATGATTATAGT
CCAATGTCTTGATATCTCAATTCGTAACTCACATAATCGGGGCCCCAATACTGGTGAATA
AAGATTATTTGCAAACGTATCATCATCAGAATCGTACTTAACACATCACAGTCAACGATT
TAGTTGAGACTTGTACCATTAAAACTTACCAAAGATATTTTTAGTAGATGTGACAGCATA
TAAAAGAGGTTGAGGAAATTATAATAAAAAAATGTAGTTAAAGGAGCGTTTTAAACCTAG
GTTTTTTTTCTCTTTNNNNNNNNNNNNNNNNNNNNNNNNNNpan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>N/>>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>NNpan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>NNNTGGTG
GTGTAAGAGGTATAAACACTGAGAAAGAGCAAGACTTTCT