C.tropicalis - PathoYeastract

View Consensus in Promoter

Warning! Overlapping consensus sequences found in either strands may not be highlighted correctly!

Standard Name

CTRG_04239

Promoter Sequence

Consensus
TKYWKHTKKTKHTTTTTKTTKYTTTKWTT: -507 -506 -505 -504 -503 -502 -501 -500 -499 -498 -497 -496 -495 -494 -493 -492 -491 -490 -489 -488 -487 -486 -485 -484 -483 -482 -481 -480 -479 -478 -477 -476 -475 -474 -473 -472 -471 -470 -469 -468 -467 -466 -465 -464 -463 -462 -461 -460 -459 -458 -457 -456 -455 -454 -453 -452 -451 -450 -449 -448 -447 -446 -445 -444 -443 -442 -441 -440 -439 -438 -437 -436

>CTRG_04239    upstream sequence, from -1000 to -1, size 1000
ACATTGACGGTGAGTATAGTGAGTCAATACCATGTCCTGATTTGCATAAATTTTTAAGGA
ATTGGAACAAGATTTCTGTTGGTGAAACAAAAGATGATATTACTTTGAAAAGTGATGAAA
TTGCACTCCGAAATTTAACTATTCTTAATACTAATTTATCTTATGAATGGATTAATTTAT
TATACAATCTCGGGCTTGGATTCTCATGGGATACAAAAGATTTGACGAGTGAGACAACTT
TTAGTTTATTAAGTCAATTAAGCTATCAAGGTTTATTTAATGTAACCGTTAAGTTTGACG
AGATCAAGGAGAAGAATAAGGCACACAACAATAGTAATTCACATATATTTGGTGCAGGAC
ATTCCAGTTCTCGAAATTCATTAGCGGCATTTGGAGGCAATTTACGATACCACCATCACC
ATCATAATCATAATCATCGCAGTAGGAAAGCAAACAGTTTAGCTCGCAAAGAGAAAATGC
CAAGAATCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNpan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>N/>>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>NNpan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>NNNNAATGTGG
GATCATTACCTTTCAAGTATTGACAGATTATCTATGTGATTTAAGAACTTCTATAAAAAC
CTTAAAGAAGTTTTCTCGTTTTTTACATGTTCATCTAATTTTGTTATTGTTTCAATTTCA
GGGGTCGGAAGTGGTTATCGATTGTGGAATTCGTCTTATTACCAAATTGCTCAAAGTATT
GGGAACTCCAATAATTAAGAAATTCTTTCAGTTGAATCATGGTTTGGATGTGCTAACGCT
GTTTTTAAAAGACTGGTGGGAGCATGACACAATCTTGTATTCGATTTTCTTGGCTGCATT
TGGCATTGATACCGAAGTCACTCAAATCCTGAATACCACTAAAAGTAAGTGTTTAGTGGA
AGCTATTAGAGCCAATGAAGATGAATTGAATCAGTTAGTT

Promoter Sequence
Complementary Strand

Consensus
TKYWKHTKKTKHTTTTTKTTKYTTTKWTT: -405 -406 -407 -408 -409 -410 -411 -412 -413 -414 -415 -416 -417 -418 -419 -420 -421 -422 -423 -424 -425 -426 -427 -428 -429 -430 -431 -432 -433 -434 -435 -436 -437 -438 -439 -440 -441 -442 -443 -444 -445 -446 -447 -448 -449 -450 -451 -452 -453 -454 -455 -456 -457 -458 -459 -460 -461 -462 -463 -464 -465 -466 -467 -468 -469 -470 -471 -472 -473 -474 -475 -476 -477 -478

>CTRG_04239	Upstream Sequence Complementary Strand
TGTAACTGCCACTCATATCACTCAGTTATGGTACAGGACTAAACGTATTTAAAAATTCCT
TAACCTTGTTCTAAAGACAACCACTTTGTTTTCTACTATAATGAAACTTTTCACTACTTT
AACGTGAGGCTTTAAATTGATAAGAATTATGATTAAATAGAATACTTACCTAATTAAATA
ATATGTTAGAGCCCGAACCTAAGAGTACCCTATGTTTTCTAAACTGCTCACTCTGTTGAA
AATCAAATAATTCAGTTAATTCGATAGTTCCAAATAAATTACATTGGCAATTCAAACTGC
TCTAGTTCCTCTTCTTATTCCGTGTGTTGTTATCATTAAGTGTATATAAACCACGTCCTG
TAAGGTCAAGAGCTTTAAGTAATCGCCGTAAACCTCCGTTAAATGCTATGGTGGTAGTGG
TAGTATTAGTATTAGTAGCGTCATCCTTTCGTTTGTCAAATCGAGCGTTTCTCTTTTACG
GTTCTTAGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNpan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>N/>>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>NNpan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>NNTTACACC
CTAGTAATGGAAAGTTCATAACTGTCTAATAGATACACTAAATTCTTGAAGATATTTTTG
GAATTTCTTCAAAAGAGCAAAAAATGTACAAGTAGATTAAAACAATAACAAAGTTAAAGT
CCCCAGCCTTCACCAATAGCTAACACCTTAAGCAGAATAATGGTTTAACGAGTTTCATAA
CCCTTGAGGTTATTAATTCTTTAAGAAAGTCAACTTAGTACCAAACCTACACGATTGCGA
CAAAAATTTTCTGACCACCCTCGTACTGTGTTAGAACATAAGCTAAAAGAACCGACGTAA
ACCGTAACTATGGCTTCAGTGAGTTTAGGACTTATGGTGATTTTCATTCACAAATCACCT
TCGATAATCTCGGTTACTTCTACTTAACTTAGTCAATCAA