C.tropicalis - PathoYeastract

View Consensus in Promoter

Warning! Overlapping consensus sequences found in either strands may not be highlighted correctly!

Standard Name

CTRG_05023

Promoter Sequence

Consensus
TKYWKHTKKTKHTTTTTKTTKYTTTKWTT: -354 -352 -351 -350 -349 -348 -347 -346 -345 -344 -343 -342 -341 -340 -339 -338 -337 -336 -335 -334 -333 -332 -331 -330 -329 -328 -327 -326 -325 -324 -323 -322 -321 -320 -319 -318 -317 -316 -315 -314 -313 -312 -311 -310 -309 -308 -307 -306 -305 -304 -303 -302 -301 -300 -299 -298 -297 -296 -295 -294 -293 -292 -291 -290 -289 -288 -287 -286 -285 -284 -283 -282 -281 -280 -279 -278 -277 -276 -275 -274 -273 -272 -271 -270 -267

>CTRG_05023    upstream sequence, from -1000 to -1, size 1000
TTCTGTCGTTCAAACTGCATTTTTACATCAATATTTCCAAAGAGCATTTGATTTAGGTAT
GAAAATCAAATCATCCTTGACTTCTGTTGTGTACAACAAATCTTTGGTTTTATCAAATGA
AGCTAGACAAGAATCTTCCACCGGTGATATTGTTAATTTAATGTCTGTTGATGTTCAAAG
GTTACAAGATTTGGTTCAAAATTTACAAATCATTTGGTCTGGACCTTTCCAAATTATCTT
GTGTTTGTATTCCTTACATTCATTACTTGGAAATGCTATGTGGGCTGGTGTCGCCATTAT
GATCATTATGATTCCTTTAAATGCCGTTATTGCCAAAACTCAAAGAAGATTACAAAAAAC
CCAAATGAAATACAAAGATGAAAGATCAAGATTAATTAATGAAATTTTAAACAATATCAA
GTCCTTGAAATTATATGCTTGGGAAAAACCATTCTTGAAACAATTAAACCATGTTAGAAA
TGATAAAGAATTGAGAAATTTGAGAAAAATGGGTGTTTTTGTTGCATTCACCAATTTCAC
TTGGAATTTAGCTCCATTTTTGGTTAGTTGTTAAAAAATTTGCTGTTTTTGTCTTGACTT
CAAAGAAAAGTTTATCAAGAAGATTTAGTATTCCCAGCATTGTCTTTGTTNNNNNNNNNN/>NNNNNNNNNNNNNNNNN>N>N>N>N>N>N>NNpan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>N/>>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>NNpan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Nn>NNNATTGACTAAATTTTTAACTGG
ATCTGAATTACAATCCGACGCTGTTATTAAAGCACCAACGCCACAAAAAATTGGTGACGA
GGCTGCTTCTATTAAAAATGGTACATTTTTATGGTCTAAAGTCAAAGGTGAACAAAACTA
CAAAGTTGCTCTTTCTAATATAAACTTGTCTGCTAAGAAAGGTCACTTGGAATGTATTAT
TGGTAAAGTTGGTTCAGGTAAGTCATCCATCATTCAAGCA

Promoter Sequence
Complementary Strand

Consensus
TKYWKHTKKTKHTTTTTKTTKYTTTKWTT: -240 -241 -242 -243 -244 -245 -246 -247 -248 -249 -250 -251 -252 -253 -254 -255 -256 -257 -258 -259 -260 -261 -262 -263 -264 -265 -266 -267 -268 -269 -270 -271 -272 -273 -274 -275 -276 -277 -278 -279 -280 -281 -282 -283 -284 -285 -286 -287 -288 -289 -290 -291 -292 -293 -294 -295 -296 -297 -298 -299 -300 -301 -302 -303 -304 -305 -306 -307 -308 -309 -310 -311 -312 -313 -314 -315 -316 -317 -318 -319 -320 -321

>CTRG_05023	Upstream Sequence Complementary Strand
AAGACAGCAAGTTTGACGTAAAAATGTAGTTATAAAGGTTTCTCGTAAACTAAATCCATA
CTTTTAGTTTAGTAGGAACTGAAGACAACACATGTTGTTTAGAAACCAAAATAGTTTACT
TCGATCTGTTCTTAGAAGGTGGCCACTATAACAATTAAATTACAGACAACTACAAGTTTC
CAATGTTCTAAACCAAGTTTTAAATGTTTAGTAAACCAGACCTGGAAAGGTTTAATAGAA
CACAAACATAAGGAATGTAAGTAATGAACCTTTACGATACACCCGACCACAGCGGTAATA
CTAGTAATACTAAGGAAATTTACGGCAATAACGGTTTTGAGTTTCTTCTAATGTTTTTTG
GGTTTACTTTATGTTTCTACTTTCTAGTTCTAATTAATTACTTTAAAATTTGTTATAGTT
CAGGAACTTTAATATACGAACCCTTTTTGGTAAGAACTTTGTTAATTTGGTACAATCTTT
ACTATTTCTTAACTCTTTAAACTCTTTTTACCCACAAAAACAACGTAAGTGGTTAAAGTG
AACCTTAAATCGAGGTAAAAACCAATCAACAATTTTTTAAACGACAAAAACAGAACTGAA
GTTTCTTTTCAAATAGTTCTTCTAAATCATAAGGGTCGTAACAGAAACAANNNNNNNNNN
NNNNNNNNNNNNNNNNNNN>N>N>N>N>NNpan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>N/>>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>NNpan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>NNNTAACTGATTTAAAAATTGACC
TAGACTTAATGTTAGGCTGCGACAATAATTTCGTGGTTGCGGTGTTTTTTAACCACTGCT
CCGACGAAGATAATTTTTACCATGTAAAAATACCAGATTTCAGTTTCCACTTGTTTTGAT
GTTTCAACGAGAAAGATTATATTTGAACAGACGATTCTTTCCAGTGAACCTTACATAATA
ACCATTTCAACCAAGTCCATTCAGTAGGTAGTAAGTTCGT