C.tropicalis - PathoYeastract

View Consensus in Promoter

Warning! Overlapping consensus sequences found in either strands may not be highlighted correctly!

Standard Name

CTRG_05676

Promoter Sequence

Consensus
TKYWKHTKKTKHTTTTTKTTKYTTTKWTT: -171 -170 -169 -168 -167 -166 -165 -164 -163 -162 -161 -160 -159 -158 -157 -156 -155 -154 -153 -152 -151 -150 -149 -148 -147 -146 -145 -144 -143 -142 -141 -140 -139 -138 -137 -136 -135 -134 -133 -132 -131 -130 -129 -128 -127 -126 -125 -124 -123 -122 -121 -120 -119 -118 -117 -116 -115 -114 -113 -112 -111 -110 -109 -108 -107 -106 -105 -104 -103 -102 -101 -100 -99

>CTRG_05676    upstream sequence, from -1000 to -1, size 1000
ATATCCTTATTTTCCATATTACAAAGATTCACATTGTCGATAATTTTGAGGGTATAGATT
ATCCCCTCACAACATCAAATGCAAAATTGTGTAATCTTGTCTAAAATTAAATATTAATTT
ACTTAATATTCATGACTTTTATCAATAATAATTAAAAATTACAAGTATTTATTAATCCCA
GTTTTAAATCTACATAAAATCATTGACATGCTAATTTTTTTCTAGTATTATTTCAACTAT
TGATTAATCAAATGTGAAGTCAAATTATTTGATTTTGTGATCACATTTTCTTTATTAAAG
ATAGTACCCATGTCTTTCACAACAATTTACTAAACCATCATGTTCAATCCTTATAATATA
CAAATTTCAATTGCCAAGAAGTCATCCCTAAAACTACGAACATTCATCTGGGATTATCTA
CGAGAATATTGTATTATTATTTCCAAAAGGTAGTGCTGAAAGTACCAAAAAAAGAAAAGA
TGATTATAGACATGCTACCAAAAAATCAATTACTGTGTTTTTTTTTTTTTTCATATTCCT
ATTTCATGTAATCATACTAATTACTAGTTGACATTGTGTGTATAAAACGTGGAGAAATGA
GAGGATGAATAGTCATTACTTATAATACTTCAACAATGATTCTTGGCCACATAACTTACA
TAATCGTTCCTTTGTAGCCGAATAGTTTTGCAAATCGATGTGAAGATGGCTAGAGCAGAA
GGCAAGAGCCATGTGAAGGGTAAATTTCATTTCATATACATAAATCTGACAAACAATTTT
TTGTGCCCCCCCGTCATTTCACACCTTGTCAGGACGAAGACATAAATGANNNNNNNNNNN
NNNNNNNNNNNNNNNNNN>N>N>N>N>N>NNpan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>N/>>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>NNpan>Npan>NNNTCAATTCATTTCCTACTAGAAATTTCAAAAA
TATTTTTTCACACCTTAATTATAAATTTAATCAACAACAA

Promoter Sequence
Complementary Strand

Consensus
TKYWKHTKKTKHTTTTTKTTKYTTTKWTT: -71 -72 -73 -74 -75 -76 -77 -78 -79 -80 -81 -82 -83 -84 -85 -86 -87 -88 -89 -90 -91 -92 -93 -94 -95 -96 -97 -98 -99 -100 -101 -102 -103 -104 -105 -106 -107 -108 -109 -110 -111 -112 -113 -114 -115 -116 -117 -118 -119 -120 -121 -122 -123 -124 -125 -126 -127 -128 -129 -130 -131 -132 -133 -134 -135 -136 -137 -138 -139 -140 -141 -142 -143

>CTRG_05676	Upstream Sequence Complementary Strand
TATAGGAATAAAAGGTATAATGTTTCTAAGTGTAACAGCTATTAAAACTCCCATATCTAA
TAGGGGAGTGTTGTAGTTTACGTTTTAACACATTAGAACAGATTTTAATTTATAATTAAA
TGAATTATAAGTACTGAAAATAGTTATTATTAATTTTTAATGTTCATAAATAATTAGGGT
CAAAATTTAGATGTATTTTAGTAACTGTACGATTAAAAAAAGATCATAATAAAGTTGATA
ACTAATTAGTTTACACTTCAGTTTAATAAACTAAAACACTAGTGTAAAAGAAATAATTTC
TATCATGGGTACAGAAAGTGTTGTTAAATGATTTGGTAGTACAAGTTAGGAATATTATAT
GTTTAAAGTTAACGGTTCTTCAGTAGGGATTTTGATGCTTGTAAGTAGACCCTAATAGAT
GCTCTTATAACATAATAATAAAGGTTTTCCATCACGACTTTCATGGTTTTTTTCTTTTCT
ACTAATATCTGTACGATGGTTTTTTAGTTAATGACACAAAAAAAAAAAAAAGTATAAGGA
TAAAGTACATTAGTATGATTAATGATCAACTGTAACACACATATTTTGCACCTCTTTACT
CTCCTACTTATCAGTAATGAATATTATGAAGTTGTTACTAAGAACCGGTGTATTGAATGT
ATTAGCAAGGAAACATCGGCTTATCAAAACGTTTAGCTACACTTCTACCGATCTCGTCTT
CCGTTCTCGGTACACTTCCCATTTAAAGTAAAGTATATGTATTTAGACTGTTTGTTAAAA
AACACGGGGGGGCAGTAAAGTGTGGAACAGTCCTGCTTCTGTATTTACTNNNNNNNNNNN
>NNNNNNNNNNNNNNNNN>N>N>N>N>N>N>NNpan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>N/>>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>NNpan>NNNNAGTTAAGTAAAGGATGATCTTTAAAGTTTTT
ATAAAAAAGTGTGGAATTAATATTTAAATTAGTTGTTGTT