Locus Information
Locus Info
Protein Info
GO Info
Orthologs
Standard Name
TRL1 Systematic Name
YJL087C Alias
LIG1, RLG1 Strain
S288c Description
tRNA ligase; required for tRNA splicing and for both splicing and translation of HAC1 mRNA in the UPR; has phosphodiesterase, polynucleotide kinase, and ligase activities; involved in turnover of tRNA introns; localized at the inner nuclear envelope and cytoplasm External sources
Open in SGD
Open in KEGG
Gene Sequence
Download FASTA Hide Seq
>TRL1 YJL087C
ATGCCTAGCCCATATGACGGTAAAAGAACAGTAACTCAGCTTGTTAACGAGTTAGAAAAG
GCAGAAAAACTATCCGGTAGAGGCAGAGCTTATAGAAGGGTTTGTGACTTATCACACAGC
AATAAGAAAGTAATTTCATGGAAATTTAACGAATGGGATTATGGCAAAAATACTATCACT
TTGCCATGTAATGCAAGAGGCTTATTTATTAGCGATGATACAACGAATCCAGTTATTGTT
GCTAGAGGATACGATAAGTTTTTCAATGTAGGCGAGGTCAACTTTACCAAGTGGAATTGG
ATTGAAGAGAACTGTACAGGGCCTTACGATGTCACTATAAAAGCCAATGGTTGTATCATT
TTTATATCTGGTTTAGAAGATGGTACCTTGGTAGTTTGTTCGAAGCATTCTACTGGACCC
AGAGCAGACGTAGACAGGAACCATGCAGAAGCAGGTGAGAAGCAACTTTTAAGACAACTG
GCGGCAATGAACATCAATCGAAGTGATTTTGCTAGAATGCTATATACCCATAATGTCACC
GCTGTGGCAGAATATTGCGATGATTCATTTGAAGAACACATCTTAGAGTATCCCCTTGAA
AAAGCTGGCCTATACTTACATGGTGTAAATGTTAATAAAGCGGAATTTGAAACTTGGGAT
ATGAAAGATGTTTCGCAAATGGCGAGTAAATACGGATTCAGGTGCGTCCAATGCATTACA
TCGAACACCTTGGAGGATTTGAAAAAGTTCCTAGATAACTGCTCTGCAACCGGATCTTTT
GAAGGGCAAGAGATTGAAGGTTTTGTTATCAGGTGCCACTTGAAGAGTACTGAAAAGCCA
TTTTTTTTCAAGTATAAATTTGAAGAACCGTATTTGATGTACCGTCAGTGGAGAGAAGTT
ACTAAAGACTATATTTCCAACAAGTCAAGAGTGTTTAAATTTAGAAAGCATAAATTTATA
ACCAACAAGTATCTTGATTTCGCAATCCCAATATTGGAGTCATCACCCAAGATCTGTGAG
AATTACTTGAAAGGTTTTGGTGTGATTGAATTGAGAAATAAGTTTCTACAATCATATGGC
ATGAGTGGGCTGGAAATCTTAAACCACGAAAAAGTGGCCGAGTTGGAATTAAAAAACGCC
ATTGATTATGATAAAGTAGACGAACGCACTAAATTTTTAATCTTTCCAATATCAGTTATT
GGATGTGGCAAAACAACAACTTCCCAGACATTAGTGAATTTGTTCCCTGACAGCTGGGGT
CATATTCAAAATGATGATATTACAGGTAAAGATAAATCTCAATTAATGAAAAAATCATTG
GAACTATTATCCAAAAAAGAAATCAAATGTGTCATAGTTGACAGAAACAATCACCAATTC
CGCGAAAGAAAGCAATTATTTGAATGGTTGAATGAACTAAAAGAAGATTATTTGGTGTAT
GATACGAACATCAAGGTAATCGGCGTGTCATTCGCGCCATATGACAAACTATCGGAAATA
AGAGACATAACACTGCAAAGAGTAATCAAAAGAGGTAACAATCACCAAAGTATTAAATGG
GACGAATTAGGAGAGAAGAAAGTGGTAGGCATCATGAATGGGTTTTTGAAAAGATATCAA
CCTGTTAATTTAGACAAATCACCAGATAATATGTTTGATTTAATGATAGAGTTAGATTTT
GGACAAGCAGACTCTTCATTAACCAATGCGAAACAAATCCTCAATGAAATTCATAAAGCT
TATCCAATTTTGGTACCAGAGATCCCGAAAGATGATGAAATTGAGACAGCGTTCAGAAGG
AGCTTAGATTACAAACCTACTGTGAGAAAAATAGTTGGTAAAGGCAACAATAATCAACAA
AAAACGCCTAAGTTAATTAAACCTACATATATCTCAGCTAAAATAGAAAACTACGATGAA
ATTATTGAATTGGTCAAGAGGTGTATTGCTAGCGATGCAGAGCTGACTGAGAAATTCAAG
CATTTACTAGCTAGTGGAAAAGTTCAGAAGGAACTTCATATAACATTAGGTCATGTCATG
TCGTCCCGTGAAAAAGAGGCAAAAAAGTTGTGGAAATCATATTGTAACAGATACACTGAC
CAGATAACGGAGTACAATAACAACCGCATAGAAAATGCACAAGGCTCTGGTAATAACCAA
AATACGCAGGTAAAAACGACCGACAAACTGAATTTTAGGCTCGAAAAACTATGTTGGGAT
GAAAAAATCATTGCTATTGTAGTGGAACTGTCTAAAGATAAAGATGGATGCATAATTGAT
GAAAACAATGAGAAAATTAAAGGGTTGTGTTGTCAAAACAAAATTCCTCATATTACGCTG
TGCAAACTTGAAAGTGGTGTTAAGGCTGTTTATTCCAATGTTCTATGTGAGAAGGTTGAA
TCTGCTGAAGTTGATGAAAATATAAAAGTGGTGAAATTGGACAACTCGAAGGAATTTGTT
GGCAGTGTATATTTAAATTTTTAG Promoter Sequence
Download FASTA
>TRL1 YJL087C
AAAGGTTCAAGGAATGCCATGCACTTGAGGATTAATTTACTCCTTTCACCGACGAGTATG
TCCTGTATAATAGAACCTTCTGAATTTCCATGAAAATAATCTAAAATCCACGATAAAGCG
CCTAACTGCTGGTCCTCGTAGTATGGAAATGGCATCTTTTTGGTGATATTGATTTGTGGA
TCAAACGGTTTAATACTGTTCAAAATTGAAATAAAATATACTCTTAGTTGAGCCTCGCTA
CGTTTGATCAATTGTTCCAAGTGAGTTAAAATCCCATGGAATTCTGAGTTTTCTTCTCGA
TTGGCTTGTCCAGACTGAATGTCTTCCAACATATCATCTAGCTTATGTACTACTTGGGTG
TATTGCTTTAAACCGACTTGATTAATACCCTTTTGTAAAATGATCTCATACTTGGAAGCT
TCGTTTGCTAGATCCTTAACTGAGGCAACGGAATTCAATGTACTTTCAATATTTCTTTGT
AATGTGGTTAAAACATTATTTCTAGCAAGAATAGGAGTGAAGAGTTGACTGGATTGATTG
GATGTAGCTGCAATTTTTTTCAAAGATTTATTGATTTCGAAAGTGAGTTTACTTGTCTTT
TGTAACTCCTGTGATAAAACTAATACGTCAGCTTCATCAATGTCAATTTCAGCGGGCATT
TCTATAAATGCTTTTGATATTATAAAACCAGAACACTTTAATGGACCTTTGCTATTCACT
GCCAGCACTTTAAGGGTACATTCACCTTGGTTTTCAAATACGTTTAAGCACACTGTTTCA
GTAAATTATCTTTATGTTCCAGCGGGCCGGCCGCGTACTTTTCCATTGATAAAATTTCAC
TATGAGTTTATCCCAAAGAAAGTATACAGAAGAGCATCTAATTCATTCCATTCTGTTGAG
AATTGCTTCGAGCAAATTTTACGCATTTGCATAGTCTTTCTTTCTTTGAAAATCTACACT
TTGACTTTAGTGATCATAAAAGTATTCATACGAAGAAGCG
Chr coordinates
Chr X from 272485-270002
