Yeastract
YEASTRACT+ INESC-ID IST IBB
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Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.
Transcription
Factor		 Target
ORF/Genes		 References Evidence
Code		 Evidence
Experiment		 Association
Type		 Strain Environmental
Group		 Environmental
Condition		 Log2FC
Stp1p YBR068C PubMed external link Jorgensen MU et al., Current genetics, 1997 Mar;31(3):241-7Jorgensen MU et al., Current genetics, 1997 Mar;31(3):241-7 Indirect lacZ - wt vs TF mutant Positive S288c Unstressed log-phase growth (control) Minimal medium; mid-log phase N/A
PubMed external link de Boer M et al., Nucleic acids research, 2000 Feb 15;28(4):974-81de Boer M et al., Nucleic acids research, 2000 Feb 15;28(4):974-81 Indirect lacZ - wt vs TF mutant Positive S288c Unstressed log-phase growth (control) 2mM leucine N/A
PubMed external link Nielsen PS et al., Molecular & general genetics : MGG, 2001 Jan;264(5):613-22Nielsen PS et al., Molecular & general genetics : MGG, 2001 Jan;264(5):613-22 Direct EMSA N/A S288c N/A N/A N/A
PubMed external link Wielemans K et al., The Journal of biological chemistry, 2010 Jan 8;285(2):855-65Wielemans K et al., The Journal of biological chemistry, 2010 Jan 8;285(2):855-65 Indirect lacZ - wt vs TF mutant Positive S288c Nitrogen source quality/availability 5mM (high) Phenylalanine N/A
PubMed external link Reimand J et al., Nucleic acids research, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic acids research, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - WT vs TF Deletion Positive BY4741; S288C; R1158 Unstressed log-phase growth (control) Standard YPD conditions Dataset ewxtracted from The Longhorn Array Database (LAD). Transcription factor gene deletion. 1.8652521093238
PubMed external link Palavecino MD et al., Journal of amino acids, 2015;2015():484702Palavecino MD et al., Journal of amino acids, 2015;2015():484702 Direct ChIP N/A S288c Nitrogen source quality/availability Leucine N/A
PubMed external link Muñoz SA et al., Microbiology (Reading, England), 2020 Jan;166(1):85-92Muñoz SA et al., Microbiology (Reading, England), 2020 Jan;166(1):85-92 Direct ChIP Positive KW018 Nitrogen source quality/availability minimal medium containing 0.17% Difco yeast nitrogen base (yeast nitrogen base without amino acids and ammonium sulfate) with 2% glucose as a carbon source and 10mM ammonium sulfate as a nitrogen source + 1.3mM leucine for 1h N/A
Direct ChIP Positive KW018 Nitrogen source quality/availability minimal medium containing 0.17% Difco yeast nitrogen base (yeast nitrogen base without amino acids and ammonium sulfate) with 2% glucose as a carbon source and 10mM proline as a nitrogen source + 1.3mM leucine for 1h N/A
Direct ChIP N/A DEBY01 Nitrogen source quality/availability Cells grown on minimal medium with 2% glucose and 10mM ammonium sulfate up to an OD600nm of 0.5-0.9 were harvested and transferred to fresh medium with 1.3 mM leucine for 1 hour. N/A
Direct ChIP N/A DEBY01 Nitrogen source quality/availability Cells grown on minimal medium with 2% glucose and 10mM proline up to an OD600nm of 0.5-0.9 were harvested and transferred to fresh medium with 1.3 mM leucine for 1 hour. N/A
Indirect lacZ - wt vs TF mutant Positive KW018 Unstressed log-phase growth (control) minimal medium containing 0.17% Difco yeast nitrogen base (yeast nitrogen base without amino acids and ammonium sulfate) with 2% glucose as a carbon source and 10mM ammonium sulfate as a nitrogen source N/A
Indirect lacZ - wt vs TF mutant Positive KW018 Nitrogen source quality/availability minimal medium containing 0.17% Difco yeast nitrogen base (yeast nitrogen base without amino acids and ammonium sulfate) with 2% glucose as a carbon source and 10mM ammonium sulfate as a nitrogen source + 1.3mM leucine for 1h N/A
Indirect lacZ - wt vs TF mutant Positive KW018 Nitrogen source quality/availability minimal medium containing 0.17% Difco yeast nitrogen base (yeast nitrogen base without amino acids and ammonium sulfate) with 2% glucose as a carbon source and 10mM proline as a nitrogen source N/A
Indirect lacZ - wt vs TF mutant Positive KW018 Nitrogen source quality/availability minimal medium containing 0.17% Difco yeast nitrogen base (yeast nitrogen base without amino acids and ammonium sulfate) with 2% glucose as a carbon source and 10mM proline as a nitrogen source + 1.3mM leucine for 1h N/A
Indirect lacZ - wt vs TF mutant Positive KW018 Nitrogen source quality/availability Cells grown on minimal medium with 2% glucose and 10mM ammonium sulfate up to an OD600nm of 0.5-0.9 were harvested and transferred to fresh medium with 1.3 mM leucine for 1 hour. N/A
Indirect lacZ - wt vs TF mutant Positive KW018 Unstressed log-phase growth (control) Cells grown on minimal medium with 2% glucose and 10mM ammonium sulfate up to an OD600nm of 0.5-0.9 were harvested and transferred to fresh medium with the same composition for 1 hour. N/A
Indirect lacZ - wt vs TF mutant Positive KW018 Nitrogen source quality/availability Cells grown on minimal medium with 2% glucose and 10mM proline up to an OD600nm of 0.5-0.9 were harvested and transferred to fresh medium with 1.3 mM leucine for 1 hour. N/A
Indirect lacZ - wt vs TF mutant Positive KW018 Nitrogen source quality/availability Cells grown on minimal medium with 2% glucose and 10mM proline up to an OD600nm of 0.5-0.9 were harvested and transferred to fresh medium with the same composition for 1 hour. N/A
Indirect LacZ - WT vs. TF double mutant Positive KW022 Nitrogen source quality/availability Cells grown on minimal medium with 2% glucose and 10mM ammonium sulfate up to an OD600nm of 0.5-0.9 were harvested and transferred to fresh medium with 1.3 mM leucine for 1 hour. N/A
Indirect LacZ - WT vs. TF double mutant Positive KW022 Unstressed log-phase growth (control) Cells grown on minimal medium with 2% glucose and 10mM ammonium sulfate up to an OD600nm of 0.5-0.9 were harvested and transferred to fresh medium with the same composition for 1 hour. N/A
Indirect LacZ - WT vs. TF double mutant Positive KW022 Nitrogen source quality/availability Cells grown on minimal medium with 2% glucose and 10mM proline up to an OD600nm of 0.5-0.9 were harvested and transferred to fresh medium with 1.3 mM leucine for 1 hour. N/A
Indirect LacZ - WT vs. TF double mutant Positive KW022 Nitrogen source quality/availability Cells grown on minimal medium with 2% glucose and 10mM proline up to an OD600nm of 0.5-0.9 were harvested and transferred to fresh medium with the same composition for 1 hour. N/A
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 Unstressed log-phase growth (control) YPD medium, 25.C N/A