Yeastract
YEASTRACT+ INESC-ID IST IBB
Home > Go Back > View Contact/Credits     Tutorial     Help

 

Back to top top

Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.
Transcription
Factor		 Target
ORF/Genes		 References Evidence
Code		 Evidence
Experiment		 Association
Type		 Strain Environmental
Group		 Environmental
Condition		 Log2FC
Rph1p YBR299W PubMed external link Cipollina C et al., Microbiology (Reading, England), 2008 Jan;154(Pt 1):337-346Cipollina C et al., Microbiology (Reading, England), 2008 Jan;154(Pt 1):337-346 Indirect Microarray analysis - WT vs TF Deletion Positive SLY34 Unstressed log-phase growth (control) Grown in rich medium (YPD) at 30 °C to log phase. Transcription factor gene deletion. 0.631771
PubMed external link Liang CY et al., Molecular biology of the cell, 2013 Oct;24(20):3251-62Liang CY et al., Molecular biology of the cell, 2013 Oct;24(20):3251-62 Indirect Microarray analysis - wt vs TF mutant Positive S288c Unstressed log-phase growth (control) YPD 30.C N/A
PubMed external link Nordberg N et al., PloS one, 2014;9(7):e95078Nordberg N et al., PloS one, 2014;9(7):e95078 Indirect Microarray analysis - wt vs TF mutant Negative S288c Unstressed log-phase growth (control) Grown in YPD media; log phase cells harvested after 3h of growth N/A
PubMed external link Shu WJ et al., Nucleic acids research, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic acids research, 2020 Sep 4;48(15):8360-8373 Indirect RNA-seq analysis - WT vs TF Deletion Positive BY4741 Carbon source quality/availability Ethanol medium - Overexpression media lacked leucine to ensure plasmid selection. The cultures grown for 70 h in ethanol medium were diluted twice with a fresh medium to ensure continuous growth. 0.490231780134252
Indirect RNA-seq analysis - WT vs TF Deletion Positive BY4741 Nitrogen source quality/availability Grown in YPD to OD600 of 0.8 at 30 ºC. Treated with rapamycin for 2h (100 nM). Transcription factor gene deletion. 0.490231780134252
PubMed external link Fang W et al., Cell reports, 2022 Apr 12;39(2):110672Fang W et al., Cell reports, 2022 Apr 12;39(2):110672 Indirect RNA-seq analysis - WT vs TF Deletion Positive CEN.PK Carbon source quality/availability Yeast cells grown to log phase in YPL medium from 0.1 OD. Transcription factor gene deletion. 0.721670826578804
Indirect RNA-seq analysis - WT vs TF Deletion Negative CEN.PK Carbon source quality/availability Yeast cells grown to log phase in YPL medium from 0.1 OD with switch to SL minimal medium for 1h. Transcription factor gene deletion. -0.2923718724286
Indirect RNA-seq analysis - WT vs TF Deletion Positive CEN.PK Carbon source quality/availability Yeast cells grown to log phase in YPL medium from 0.1 OD with switch to SL minimal medium for 3h. Transcription factor gene deletion. 0.562222901723774
PubMed external link Glazier VE et al., mBio, 2023 Oct 31;14(5):e0152123Glazier VE et al., mBio, 2023 Oct 31;14(5):e0152123 Indirect RNA-seq analysis - WT vs TF Deletion Positive BY4741 Unstressed log-phase growth (control) Cultured in minimal medium (1.7 g/L YNB, 5 g/L ammonium sulfate, 20 g/L glucose, 80 mg/L histidine, 80 mg/L methionine, 80 mg/L uracil and 240 mg/L leucine) with 200 rpm orbital shaking at 30°C, pH 5.5, until the mid-exponential phase (OD600 = 0.6). Transcription factor gene deletion. 1.18098851229306