Yeastract
YEASTRACT+ INESC-ID IST IBB
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Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.
Transcription
Factor
Target
ORF/Genes
References Evidence
Code
Evidence
Experiment
Association
Type
Strain Environmental
Group
Environmental
Condition
Log2FC
Gat1p YEL064C PubMed external link Hong J et al., eLife, 2018 Apr 5;7():Hong J et al., eLife, 2018 Apr 5;7(): Indirect RNA-seq analysis - WT vs TF Mutant N/A FY4 Cell cycle/morphology Early first acidic phase (day 4): Giant colonies grown on GM solid agar (1% yeast extract, 3% glycerol, 2% agar, 30 mM CaCl2) at room temperature; colonies harvested at day 4, corresponding to the early first acidic phase. 0.829484748
Indirect RNA-seq analysis - WT vs TF Mutant N/A FY4 Nitrogen source quality/availability Cells cultured in ammonium-limited chemostats.Strain bearing single GAT1 missense mutations gat1-1 (W321). Transcription factor gene mutation. 0.829484748
PubMed external link Sato A et al., Bioscience, biotechnology, and biochemistry, 2021 Feb 24;85(3):587-599Sato A et al., Bioscience, biotechnology, and biochemistry, 2021 Feb 24;85(3):587-599 Indirect RT-PCR - wt vs. TF double mutant Positive X2180-1B Nitrogen source quality/availability Nitrogen starved cells (Cells were grown in YPD medium to an early logarithmic phase. For nitrogen starvation, cells were washed once and further cultured for 6 h in SD-N ((0.17% yeast nitrogen base without amino acids and ammonium sulfate, and 2% glucose)). N/A