S.cerevisiae - Yeastract

Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.

Transcription Factor	Target ORF/Genes	References	Evidence Code	Evidence Experiment	Association Type	Strain	Environmental Condition	Log2FC
Rph1p	YGR021W	PubMed Cipollina C et al., Microbiology (Reading, England), 2008 Jan;154(Pt 1):337-346	Indirect	Microarray analysis - WT vs TF Deletion	Negative	SLY34	Grown in rich medium (YPD) at 30 °C to log phase. Transcription factor gene deletion.	-0.359214
		PubMed Reimand J et al., Nucleic acids research, 2010 Aug;38(14):4768-77	Indirect	Microarray analysis - WT vs TF Deletion	Negative	BY4741; S288C; R1158	Standard YPD conditions Dataset ewxtracted from The Longhorn Array Database (LAD). Transcription factor gene deletion.	-0.47873736537038
		PubMed Shu WJ et al., Nucleic acids research, 2020 Sep 4;48(15):8360-8373	Indirect	RNA-seq analysis - WT vs TF Deletion	Negative	BY4741	Steady state carbon-limited chemostat cultures operated at a dilution rate of 0.05 per h by continuous addition of medium (feed concentration of glucose, 10 g/liter) at 30°C. pH controlled at 5, aerated with 0.5 volume of air/volume of liquid/min and with 800 rpm agitation. Transcription factor gene deletion.	-0.739565543420658
			Indirect	RNA-seq analysis - WT vs TF Deletion	Negative	BY4741	Ethanol medium - Overexpression media lacked leucine to ensure plasmid selection. The cultures grown for 70 h in ethanol medium were diluted twice with a fresh medium to ensure continuous growth.	-1.19366122932536
			Indirect	RNA-seq analysis - WT vs TF Deletion	Negative	BY4741	Grown in YPD to OD600 of 0.8 at 30 ºC. Transcription factor gene deletion.	-0.739565543420658
			Indirect	RNA-seq analysis - WT vs TF Deletion	Negative	BY4741	Grown in YPD to OD600 of 0.8 at 30 ºC. Treated with rapamycin for 2h (100 nM). Transcription factor gene deletion.	-1.19366122932536
		PubMed Couvillion M et al., eLife, 2022 May 16;11():	Indirect	RNA-seq analysis - WT vs TF Deletion	Negative	BY4741	Overnight cultures grown in YPD medium were diluted to OD600 = 0.05 in 1 L YPD and incubated at 30 °C with 200 rpm shaking to mid-log phase (OD600 = 0.6–0.8). Transcription factor gene deletion.	-0.74315524139685
		PubMed Glazier VE et al., mBio, 2023 Oct 31;14(5):e0152123	Indirect	RNA-seq analysis - WT vs TF Deletion	Negative	BY4741	Cultured in minimal medium (1.7 g/L YNB, 5 g/L ammonium sulfate, 20 g/L glucose, 80 mg/L histidine, 80 mg/L methionine, 80 mg/L uracil and 240 mg/L leucine) with 200 rpm orbital shaking at 30°C, pH 5.5, until the mid-exponential phase (OD600 = 0.6). Transcription factor gene deletion.	-0.640120653681837