S.cerevisiae - Yeastract

Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.

Transcription Factor	Target ORF/Genes	References	Evidence Code	Evidence Experiment	Association Type	Strain	Environmental Condition	Log2FC
Ifh1p	YHL033C	PubMed Wade JT et al., Nature, 2004 Dec 23;432(7020):1054-8	Direct	Chip-on-chip	N/A	S288c	YPD	N/A
		PubMed Schawalder SB et al., Nature, 2004 Dec 23;432(7020):1058-61	Indirect	Microarray analysis - wt vs TF overexpression	Positive	W303	Cells were grown to 2 x107 cells/ml in YPLG medium (containing lactic acid and glycerol) and harvested 30 minutes after 2% galactose addition.	N/A
			Indirect	Microarray analysis - wt vs TF overexpression	Positive	W303	Cells were grown to 2 x107 cells/ml in YPLG medium (containing lactic acid and glycerol) and harvested 40 minutes after 2% galactose addition.	N/A
			Indirect	Microarray analysis - wt vs TF overexpression	Positive	W303	Cells were grown to 2 x107 cells/ml in YPLG medium (containing lactic acid and glycerol) and harvested 60 minutes after 2% galactose addition.	N/A
		PubMed Chen XJ et al., Science (New York, N.Y.), 2005 Feb 4;307(5710):714-7	Indirect	Microarray analysis - WT vs TF Deletion	Positive	DR34	Grown in log phase, amplified according to conventional methods. Control is a deletion mutant for FHL1. Transcription factor gene deletion.	2.00020324
		PubMed Badis G et al., Molecular cell, 2008 Dec 26;32(6):878-87	Direct	ChIP	N/A	S288c	N/A	N/A
		PubMed Lavoie H et al., PLoS biology, 2010 Mar 9;8(3):e1000329	Direct	Chip-on-chip	N/A	S288c	YPD	N/A
		PubMed Cai L et al., Cell reports, 2013 Sep 26;4(6):1063-71	Direct	ChIP-seq	N/A	S288c	Library construction was performed using a protocol from the following website: http://bioinfo.mbb.yale.edu/array/Solexa_LibraryPrep_20080229ge.pdf Sequencing was performed on an Illumina GA IIX supervised by the UTSW Microarray Core Facility. Genome-wide occupancy profile of Ifh1-FLAG was obtained for cells collected from oxidative growth of the yeast metabolic cycle system	N/A
		PubMed Reja R et al., Genes & development, 2015 Sep 15;29(18):1942-54	Direct	ChIP-exo	N/A	S288c	Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD	N/A
		PubMed Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314	Direct	ChIP-exo	N/A	BY4741	YPD medium, 25.C	N/A