Yeastract
YEASTRACT+ INESC-ID IST IBB
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Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.
Transcription
Factor		 Target
ORF/Genes		 References Evidence
Code		 Evidence
Experiment		 Association
Type		 Strain Environmental
Condition		 Log2FC
Swi4p YHL048W PubMed external link Iyer VR et al., Nature, 2001 Jan 25;409(6819):533-8Iyer VR et al., Nature, 2001 Jan 25;409(6819):533-8 Direct Chip-on-chip N/A S288c N/A N/A
PubMed external link Reimand J et al., Nucleic acids research, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic acids research, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - WT vs TF Deletion Negative BY4741; S288C; R1158 Standard YPD conditions Dataset ewxtracted from The Longhorn Array Database (LAD). Transcription factor gene deletion. -0.84810594720933
PubMed external link Hendler A et al., PLoS genetics, 2017 May;13(5):e1006778Hendler A et al., PLoS genetics, 2017 May;13(5):e1006778 Indirect RNA-seq analysis - WT vs TF Deletion Negative 15Daub Yeast strains were grown in rich medium at 30°C to an optical density at 600 nm (OD600) of 0.5. -0.473236831130166
Indirect RNA-seq analysis - WT vs TF Deletion Negative 15Daub Yeast growth media (yeast-peptone-dextrose [YPD], yeast-peptone-acetate, and synthetic complete) were of standard composition -0.410961459878172
Indirect RNA-seq analysis - WT vs TF Deletion Negative 15Daub Cells were grown in 7 ml of SC over-night at 30°C. Cells were synchronized by alpha factor arrest and release and immediately collected. Transcription factor gene deletion. -0.473236831130166
Indirect RNA-seq analysis - WT vs TF Deletion Negative 15Daub Cells were grown in 7 ml of SC over-night at 30°C. Cells were synchronized by alpha factor arrest and release and after 30 minutes they were collected. Transcription factor gene deletion. -0.410961459878172