S.cerevisiae - Yeastract

Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.

Transcription Factor	Target ORF/Genes	References	Evidence Code	Evidence Experiment	Association Type	Strain	Environmental Condition	Log2FC
Hac1p	YKL073W	PubMed Kawahara T et al., Molecular biology of the cell, 1997 Oct;8(10):1845-62	Indirect	Northern blot - wt vs TF mutant	Positive	S288c	SC medium; mid-log phase	N/A
		PubMed Mori K et al., The Journal of biological chemistry, 1998 Apr 17;273(16):9912-20	Direct	EMSA	N/A	S288c	N/A	N/A
		PubMed Kimata Y et al., Genes to cells : devoted to molecular & cellular mechanisms, 2006 Jan;11(1):59-69	Indirect	Microarray analysis - WT vs TF Deletion	Positive	BY4742	Grown in SD medium (2% glucose, 0.66% yeast nitrogen base and appropriate auxotrophic supplements) solidified with 2% agar; or in liquid SC medium (SD medium supplemented with amino acids and vitamins) at 30 °C. Transcription factor gene deletion.	N/A
		PubMed Chua G et al., Proceedings of the National Academy of Sciences of the United States of America, 2006 Aug 8;103(32):12045-50	Indirect	Microarray analysis - wt vs TF overexpression	Positive	N/A	Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h	N/A
		PubMed Hou J et al., FEMS yeast research, 2014 May;14(3):481-94	Indirect	Microarray analysis - WT vs TF Deletion	Negative	cen.pk-113-5D	The strains were inoculated into SD-Ura medium and grown to OD600 nm = 0.4. 2 mM DTT was added into the medium to induce ER stress for 2 h.	-1.779228
		PubMed Nair R et al., AMB Express, 2018 Jul 16;8(1):116	Indirect	RNA-seq - wt vs TF mutant	Positive	BrUn1362	Tunicamycin	N/A
			Indirect	RNA-seq - wt vs TF mutant	Positive	BrUn1362	5mM DTT	N/A
			Indirect	Ribo-seq: WT vs TF mutant	Positive	BrUn1362	Tunicamycin	N/A
			Indirect	Ribo-seq: WT vs TF mutant	Positive	BrUn1362	5mM DTT	N/A