Yeastract
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Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.
Transcription
Factor		 Target
ORF/Genes		 References Evidence
Code		 Evidence
Experiment		 Association
Type		 Strain Environmental
Group		 Environmental
Condition		 Log2FC
Rap1p YMR011W PubMed external link Alenquer M et al., FEMS yeast research, 2006 Dec;6(8):1130-9Alenquer M et al., FEMS yeast research, 2006 Dec;6(8):1130-9 Indirect Microarray analysis - WT vs TF Deletion Positive W303a Unstressed log-phase growth (control) Grown in complete synthetic medium (CSM) when selection was required, or in rich medium (YPD) at 30°C. Temperature shift experiment: exponentially growing yeast cells grown in YPD (A600 = 0.8 − 1.2) at 37°C for 1 h. Transcription factor gene deletion. 2.719539
PubMed external link Reimand J et al., Nucleic acids research, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic acids research, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - WT vs TF Deletion Positive BY4741; S288C; R1158 Unstressed log-phase growth (control) Standard YPD conditions Dataset ewxtracted from The Longhorn Array Database (LAD). Transcription factor gene deletion. 0.79459896092211
PubMed external link Byun JY et al., Microbial cell factories, 2025 Feb 24;24(1):47Byun JY et al., Microbial cell factories, 2025 Feb 24;24(1):47 Indirect RNA-seq - wt vs TF overexpression Negative CEN.PK2-1D Carbon source quality/availability YPD medium (15h) (diauxic shift) -1.61530988809568
Indirect RNA-seq - wt vs TF overexpression Negative CEN.PK2-1D Carbon source quality/availability YPD medium (36h) (post-diauxic shift) -3.07658599163753
Indirect RNA-seq analysis - TF Over-expression vs WT Negative cen.pk-2-1C Unstressed log-phase growth (control) RNA extraction at 15h. Medium: YPD (1% yeast extract, 2% peptone, 2% glucose) or synthetic complete (SC) medium supplemented as required for auxotrophic markers. Temperature: 30°C, aerobic shaking. Growth phase: exponential or stationary phase. -3.06377401622968
Indirect RNA-seq analysis - TF Over-expression vs WT Negative cen.pk-2-1C Carbon source quality/availability RNA extraction at 36h. Medium: YPD (1% yeast extract, 2% peptone, 2% glucose) or synthetic complete (SC) medium supplemented as required for auxotrophic markers. Temperature: 30°C, aerobic shaking. Growth phase: exponential or stationary phase. -8.43615727581547