Yeastract
YEASTRACT+ INESC-ID IST IBB
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Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.
Transcription
Factor		 Target
ORF/Genes		 References Evidence
Code		 Evidence
Experiment		 Association
Type		 Strain Environmental
Group		 Environmental
Condition		 Log2FC
Rim101p YOL122C PubMed external link Shock TR et al., Eukaryotic cell, 2009 Apr;8(4):606-16Shock TR et al., Eukaryotic cell, 2009 Apr;8(4):606-16 Indirect Microarray analysis - wt vs TF mutant Positive S288c Unstressed log-phase growth (control) Exponential phase cells cultivated in YNB (yeast nitrogen base), 2% glucose and 2.65 g/L NH4(SO4)2 N/A
PubMed external link Reimand J et al., Nucleic acids research, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic acids research, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - WT vs TF Deletion Positive BY4741; S288C; R1158 Unstressed log-phase growth (control) Standard YPD conditions Dataset ewxtracted from The Longhorn Array Database (LAD). Transcription factor gene deletion. 0.82847642984066
PubMed external link Read T et al., PLoS genetics, 2016 Jan;12(1):e1005746Read T et al., PLoS genetics, 2016 Jan;12(1):e1005746 Indirect RNA-seq analysis - WT vs TF Deletion Positive L6441 Ion/metal/phosphate/sulfur/vitamin availability Cells were grown in 100 ml of CSD (Chelex-treated synthetic defined medium) containing <100 nM of zinc. Cells were inoculated from overnight cultures into CSD at an initial OD600 = 0.01 and grown to mid-log phase (OD600 ≈ 0.5) before RNA isolation. 2.45870450267415
Indirect RNA-seq analysis - WT vs TF Deletion Positive L6441 Unstressed log-phase growth (control) Grown to mid-log phase in standard YPD media. Transcription factor gene deletion. 2.45870450267415