Yeastract
YEASTRACT+ INESC-ID IST IBB
Home > Go Back > View Contact/Credits     Tutorial     Help

 

Back to top top

Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.
Transcription
Factor		 Target
ORF/Genes		 References Evidence
Code		 Evidence
Experiment		 Association
Type		 Strain Environmental
Group		 Environmental
Condition		 Log2FC
Rox1p YOR010C PubMed external link Murad AM et al., Molecular microbiology, 2001 Nov;42(4):981-93Murad AM et al., Molecular microbiology, 2001 Nov;42(4):981-93 Indirect Microarray analysis - wt vs TF mutant Negative JM43 Carbon source quality/availability Aerobiosis; cells grown in SSG-TEA (10 g/L galactose, 0.1% Tween 80, 20 mg/L ergosterol, 350 ppm silicone antifoam) or YPGalactose medium N/A
PubMed external link Ter Linde JJ et al., Yeast (Chichester, England), 2002 Jul;19(10):825-40Ter Linde JJ et al., Yeast (Chichester, England), 2002 Jul;19(10):825-40 Indirect Microarray analysis - wt vs TF mutant Negative CEN.PK113-7D Carbon source quality/availability Steady-state chemostat cultures aerobically grown on mineral mediium containing 7.5 g/L glucose (growth-limiting nutrient) N/A
PubMed external link Chua G et al., Proceedings of the National Academy of Sciences of the United States of America, 2006 Aug 8;103(32):12045-50Chua G et al., Proceedings of the National Academy of Sciences of the United States of America, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Negative N/A Carbon source quality/availability Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h N/A
PubMed external link Reimand J et al., Nucleic acids research, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic acids research, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - WT vs TF Deletion Negative BY4741; S288C; R1158 Unstressed log-phase growth (control) Standard YPD conditions Dataset ewxtracted from The Longhorn Array Database (LAD). Transcription factor gene deletion. -2.5027365078145
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 Unstressed log-phase growth (control) YPD medium, 25.C N/A
PubMed external link Horkai D et al., PLoS biology, 2023 Aug;21(8):e3002245Horkai D et al., PLoS biology, 2023 Aug;21(8):e3002245 Indirect RNA-seq analysis - WT vs TF Deletion Negative MEP Carbon source quality/availability YPD,48h: Cells were grown in YP + 2% glucose (YPD) at 30°C, 200 rpm and mother cells were harvested 48h after estradiol addition (added at 2h post-inoculation). -0.74002
Indirect RNA-seq analysis - WT vs TF Deletion Negative MEP Unstressed log-phase growth (control) YPD,log: Cells were grown in YP + 2% glucose (YPD) at 30°C, 200 rpm and harvested at log phase as a young control. -0.5827