S.cerevisiae - Yeastract

Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.

Transcription Factor	Target ORF/Genes	References	Evidence Code	Evidence Experiment	Association Type	Strain	Environmental Condition	Log2FC
Hac1p	YOR288C	PubMed Kimata Y et al., Genes to cells : devoted to molecular & cellular mechanisms, 2006 Jan;11(1):59-69	Indirect	Microarray analysis - WT vs TF Deletion	Positive	BY4742	Grown in SD medium (2% glucose, 0.66% yeast nitrogen base and appropriate auxotrophic supplements) solidified with 2% agar; or in liquid SC medium (SD medium supplemented with amino acids and vitamins) at 30 °C. Transcription factor gene deletion.	N/A
		PubMed Hou J et al., FEMS yeast research, 2014 May;14(3):481-94	Indirect	Microarray analysis - WT vs TF Deletion	Negative	cen.pk-113-5D	The strains were inoculated into SD-Ura medium and grown to OD600 nm = 0.4. 2 mM DTT was added into the medium to induce ER stress for 2 h.	-2.567179
		PubMed Pincus D et al., Proceedings of the National Academy of Sciences of the United States of America, 2014 Oct 14;111(41):14800-5	Indirect	RNA-seq - wt vs TF overexpression	Positive	S288c	DTT and Tunicamycin	N/A
		PubMed Nair R et al., AMB Express, 2018 Jul 16;8(1):116	Indirect	RNA-seq - wt vs TF mutant	Positive	BrUn1362	Tunicamycin	N/A
			Indirect	RNA-seq - wt vs TF mutant	Positive	BrUn1362	5mM DTT	N/A
			Indirect	Ribo-seq: WT vs TF mutant	Positive	BrUn1362	Tunicamycin	N/A
			Indirect	Ribo-seq: WT vs TF mutant	Positive	BrUn1362	5mM DTT	N/A