S.cerevisiae - Yeastract

Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.

Transcription Factor	Target ORF/Genes	References	Evidence Code	Evidence Experiment	Association Type	Strain	Environmental Condition	Log2FC
Aft1p	YOR382W	PubMed Sokolíková B et al., The Biochemical journal, 2000 Dec 15;352 Pt 3(Pt 3):893-8	N/A		N/A	S288c	N/A	N/A
		PubMed Protchenko O et al., The Journal of biological chemistry, 2001 Dec 28;276(52):49244-50	Indirect	Northern blot - wt vs TF overexpression	Positive	S288c	cells grown to mid log phase in synthetic iron-replete medium, expressing a constitutive AFT1 allele	N/A
		PubMed Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104	Direct	Chip-on-chip	N/A	S288c	N/A	N/A
		PubMed Courel M et al., Molecular and cellular biology, 2005 Aug;25(15):6760-71	Indirect	Microarray WT vs TF mutant	Positive	Y14438	Iron-depleted conditions - Defined medium (iron-limiting and copper-limiting yeast nitrogen base ); 30.C.	N/A
			Indirect	Microarray analysis - wt vs TF mutant	Positive	SCMC01	Iron-depleted conditions - Defined medium (iron-limiting and copper-limiting yeast nitrogen base ); 30.C.	N/A
		PubMed Pagani MA et al., Molecular microbiology, 2007 Jul;65(2):521-37	Indirect	Microarray analysis - WT vs TF Deletion	Positive	BY4741	Grown in YPD to OD = 0.8 at 28°C. Centrifugation and resuspension in fresh YPD for periods of 30 and 60 min. Transcription factor gene deletion.	N/A
			Indirect	Microarray analysis - WT vs TF Deletion	Positive	BY4741	Grown in YPD to OD = 0.8 at 28°C. Centrifugation and resuspension in YPD supplemented with 5 mM ZnCl2 for periods of 30 and 60 min. Transcription factor gene deletion.	N/A
		PubMed Reimand J et al., Nucleic acids research, 2010 Aug;38(14):4768-77	Indirect	Microarray analysis - WT vs TF Deletion	Positive	BY4741; S288C; R1158	Standard YPD conditions Dataset ewxtracted from The Longhorn Array Database (LAD). Transcription factor gene deletion.	1.1383118028105
		PubMed Berthelet S et al., Genetics, 2010 Jul;185(3):1111-28	Indirect	Microarray analysis - WT vs TF Deletion	Positive	YKB779	Grown in YPD at 30°C to OD600 of 0.4. Transcription factor gene deletion.	1.749798
		PubMed Landstetter N et al., Omics : a journal of integrative biology, 2010 Dec;14(6):651-63	Indirect	Northern blot - wt vs TF mutant	Positive	S288c	Pyrrolidine dithiocarbamate (PDTC) stress	N/A
		PubMed Jaehnig EJ et al., Cell reports, 2013 Jul 11;4(1):174-88	Indirect	Microarray analysis - wt vs TF mutant	Positive	S288c	N/A	N/A
		PubMed Gil FN et al., Environmental microbiology, 2017 Feb;19(2):485-499	Indirect	RT-PCR WT vs TF deletion mutant	Positive	S288c	Alachlor	N/A
			Indirect	RT-PCR - wt vs TF mutant	Positive	BY4741	Alachlor	N/A
		PubMed Caballero-Molada M et al., The Biochemical journal, 2018 Apr 30;475(8):1523-1534	Indirect	RT-PCR - wt vs TF mutant	Positive	BY4741	SD medium, mid exponential phase	N/A
			Indirect	RT-PCR - wt vs TF mutant	Positive	BY4741	Cells cultured to mid-exponential phase in SD medium	N/A