Yeastract
YEASTRACT+ INESC-ID IST IBB
Home > Go Back > View Contact/Credits     Tutorial     Help

 

Back to top top

Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.
Transcription
Factor		 Target
ORF/Genes		 References Evidence
Code		 Evidence
Experiment		 Association
Type		 Strain Environmental
Group		 Environmental
Condition		 Log2FC
Ifh1p YPR102C PubMed external link Schawalder SB et al., Nature, 2004 Dec 23;432(7020):1058-61Schawalder SB et al., Nature, 2004 Dec 23;432(7020):1058-61 Indirect Microarray analysis - wt vs TF overexpression Positive W303 Carbon source quality/availability Cells were grown to 2 x107 cells/ml in YPLG medium (containing lactic acid and glycerol) and harvested 30 minutes after 2% galactose addition. N/A
Indirect Microarray analysis - wt vs TF overexpression Positive W303 Carbon source quality/availability Cells were grown to 2 x107 cells/ml in YPLG medium (containing lactic acid and glycerol) and harvested 40 minutes after 2% galactose addition. N/A
Indirect Microarray analysis - wt vs TF overexpression Positive W303 Carbon source quality/availability Cells were grown to 2 x107 cells/ml in YPLG medium (containing lactic acid and glycerol) and harvested 60 minutes after 2% galactose addition. N/A
PubMed external link Chen XJ et al., Science (New York, N.Y.), 2005 Feb 4;307(5710):714-7Chen XJ et al., Science (New York, N.Y.), 2005 Feb 4;307(5710):714-7 Direct ChIP N/A S288c Unstressed log-phase growth (control) Exponential cells cultivated in YPD growth medium N/A
PubMed external link Rudra D et al., Molecular and cellular biology, 2007 Jul;27(13):4815-24Rudra D et al., Molecular and cellular biology, 2007 Jul;27(13):4815-24 Direct ChIP N/A S288c N/A N/A N/A
PubMed external link Lavoie H et al., PLoS biology, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS biology, 2010 Mar 9;8(3):e1000329 Direct Chip-on-chip N/A S288c Unstressed log-phase growth (control) YPD N/A
PubMed external link Cai L et al., Cell reports, 2013 Sep 26;4(6):1063-71Cai L et al., Cell reports, 2013 Sep 26;4(6):1063-71 Direct ChIP-seq N/A S288c Stress Library construction was performed using a protocol from the following website: http://bioinfo.mbb.yale.edu/array/Solexa_LibraryPrep_20080229ge.pdf Sequencing was performed on an Illumina GA IIX supervised by the UTSW Microarray Core Facility. Genome-wide occupancy profile of Ifh1-FLAG was obtained for cells collected from oxidative growth of the yeast metabolic cycle system N/A
PubMed external link Reja R et al., Genes & development, 2015 Sep 15;29(18):1942-54Reja R et al., Genes & development, 2015 Sep 15;29(18):1942-54 Direct ChIP-exo N/A S288c Unstressed log-phase growth (control) Strain was grown to OD600 0.8 at 25.C in 500 mL of YPD N/A
PubMed external link Kim MS et al., Biochimica et biophysica acta, 2016 Aug;1859(8):1004-13Kim MS et al., Biochimica et biophysica acta, 2016 Aug;1859(8):1004-13 Indirect RT-PCR - wt vs TF mutant Positive S288c Stress Cells BY4741 ifh1 DELTA::loxP FHL1-3HA::kanMX6 p416-PIFH1-IFH1-13Myc-TADH1 and BY4741 ifh1 DELTA::loxP FHL1-3HA::kanMX6 p416-PIFH1-IFH1 T681A-13Myc-TADH1 were grown in YPD medium to exponential phases and treated with 200 ng/ml of rapamycin for 0, 10, 30 and 60 min N/A
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 Unstressed log-phase growth (control) YPD medium, 25.C N/A