This work was partially supported by the Portuguese Fundação para a Ciência e Tecnologia via:
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National funds through Programa Operacional Regional de Lisboa 2020, LISBOA-01-0145-FEDER-022231 – the Biodata.pt Research Infrastructure.
The N.C. Yeastract database was constructed based on the YEASTRACT database (http://yeastract.com).
All past and present colleagues and collaborators of the YEASTRACT project are deeply acknowledged.
The information about non-conventional yeast genes other than documented regulations, potential
regulations and the TF binding sites contained in N.C. Yeastract are gathered from:
Ensembl Fungi, GenBank, Gene Ontology (GO) Consortium and YEASTRACT. We acknowledge these platforms for
making that information available to the public by easy file downloads.
We are additionally grateful to colleagues and friends from the yeast community for their encouragement
and suggestions.
Ensembl Fungi reference:
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Daniel R. Zerbino, Premanand Achuthan, Wasiu Akanni, M. Ridwan Amode, Daniel Barrell, Jyothish Bhai,
Konstantinos Billis, Carla Cummins, Astrid Gall, Carlos García Giro´n, Laurent Gil, Leo Gordon, Leanne
Haggerty, Erin Haskell, Thibaut Hourlier, Osagie G. Izuogu, Sophie H. Janacek, Thomas Juettemann,
Jimmy Kiang To, Matthew R. Laird, Ilias Lavidas, Zhicheng Liu, Jane E. Loveland, Thomas Maurel, William
McLaren, Benjamin Moore, Jonathan Mudge, Daniel N. Murphy, Victoria Newman, Michael Nuhn, Denye
Ogeh, Chuang Kee Ong, Anne Parker, Mateus Patricio, Harpreet Singh Riat, Helen Schuilenburg, Dan
Sheppard, Helen Sparrow, Kieron Taylor, Anja Thormann, Alessandro Vullo, Brandon Walts, Amonida
Zadissa, Adam Frankish, Sarah E. Hunt, Myrto Kostadima, Nicholas Langridge, Fergal J. Martin, Matthieu
Muffato, Emily Perry, Magali Ruffier, Dan M. Staines, Stephen J. Trevanion, Bronwen L. Aken, Fiona
Cunningham, Andrew Yates, Paul Flicek (2018) Ensembl 2018 Nucleic Acids Res. 46(Database issue):
D754–D761
GenBank reference:
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Karen Clark, Ilene Karsch-Mizrachi, David J. Lipman, James Ostell, and Eric W. Sayers (2016) GenBank
Nucleic Acids Res. 44(Database issue): D67–D72.
Gene Ontology references:
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The Gene Ontology Consortium (2000)
Gene Ontology: tool for the unification of biology
Nature Genet., 25: 25-29
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The Gene Ontology Consortium (2015)
Gene Ontology Consortium: going forward
Nucleic Acids Res., 43(Database issue): D1049-D1056
YEASTRACT references:
- Please consult the reference list here.
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