CommunityYeastract/R.toruloides currently includes information about each gene of yeast Rhodotorula toruloides NP11, including gene and promoter sequences, amino acid sequence and gene annotation, extracted from GenBank, Genome Assembly GCF_000320785.1. CommunityYeastract/R.toruloides currently includes no regulatory data, but enables access to regulatory prediction based on known or potential regulatory associations in closely related yeast species.

Use CommunityYeastract's set of queries to predict transcription regulation at the gene and genomic levels, a key feature to the functional analysis of a gene and to the full exploitation of transcriptomics data. Additionally, try our new interspecies comparison tool to find more about the differences in transcription network organization among related yeast species.

P.T. Monteiro, J. Oliveira, P. Pais, M. Antunes†, M. Palma, M. Cavalheiro, M. Galocha, C.P. Godinho, L.C. Martins, N. Bourbon, M.N. Mota, R.A. Ribeiro, R.Viana, I. Sá-Correia, M.C. Teixeira (2020) YEASTRACT+: a portal for cross-species comparative genomics of transcription regulation in yeasts Nucleic Acids Research, 48(D1):D642-D649 doi:10.1093/nar/gkz859
J. Oliveira, M. Antunes, C.P. Godinho, M.C. Teixeira, I. Sá-Correia, P.T. Monteiro (2021) From a genome assembly to full regulatory network prediction: the case study of Rhodotorula toruloides putative Haa1-regulon BMC Bioinformatics, 22:399 doi:10.1186/s12859-021-04312-3
C.P. Godinho, M. Palma, J. Oliveira, M. Mota, M. Antunes, M.C. Teixeira, P.T. Monteiro, I. Sá-Correia (2021) The N.C.Yeastract and CommunityYeastract databases to study gene and genomic transcription regulation in non-conventional yeasts FEMS Yeast Research, 21(6): foab045 doi:10.1093/femsyr/foab045