N.C.Yeastract/Y.lipolytica currently includes the description of 9.821 documented regulatory associations between transcription factors (TF) and target genes. Information about each gene has been extracted from the Genbank assembly accession GCA_000002525, corresponding to the genome assembly of Yarrowia lipolytica CLIB122, the representative genome submitted by Genolevures Consortium at Jul 02, 2004. For each gene, the associated Gene Ontology (GO) terms and their hierarchy in GO were obtained from EnsemblFungi. Currently, N.C.Yeastract maintains a total of 17.173 terms from GO for Y.lipolytica. All the information in N.C.Yeastract is updated regularly to match recent literature on Yarrowia lipolytica regulatory networks.

Use N.C. Yeastract's set of queries to predict transcription regulation at the gene and genomic levels, a key feature to the functional analysis of a gene and to the full exploitation of transcriptomics data. Additionally, try our new interspecies comparison tool to find more about the differences in transcription network organization among related yeast species.

P.T. Monteiro, J. Oliveira, P. Pais, M. Antunes†, M. Palma, M. Cavalheiro, M. Galocha, C.P. Godinho, L.C. Martins, N. Bourbon, M.N. Mota, R.A. Ribeiro, R.Viana, I. Sá-Correia, M.C. Teixeira (2020) YEASTRACT+: a portal for cross-species comparative genomics of transcription regulation in yeasts Nucleic Acids Research, 48(D1):D642-D649 doi:10.1093/nar/gkz859
C.P. Godinho, M. Palma, J. Oliveira, M. Mota, M. Antunes, M.C. Teixeira, P.T. Monteiro, I. Sá-Correia (2021) The N.C.Yeastract and CommunityYeastract databases to study gene and genomic transcription regulation in non-conventional yeasts FEMS Yeast Research, 21(6): foab045 doi:10.1093/femsyr/foab045
M.C. Teixeira, R. Viana, M. Palma, J. Oliveira, M. Galocha, M.N. Mota, D. Couceiro, M.G. Pereira, M. Antunes, I.V. Costa, P. Pais, C. Parada, C. Chaouiya, I. Sá-Correia, P.T. Monteiro (2023) YEASTRACT+: a portal for the exploitation of global transcription regulation and metabolic model data in yeast biotechnology and pathogenesis Nucleic Acids Research, 51(D1):D785-D791 doi:10.1093/nar/gkac1041