C.tropicalis - PathoYeastract

View Consensus in Promoter

Warning! Overlapping consensus sequences found in either strands may not be highlighted correctly!

Standard Name

CTRG_03458

Promoter Sequence

Consensus
TKYWKHTKKTKHTTTTTKTTKYTTTKWTT: -318 -317 -316 -315 -314 -313 -312 -311 -310 -309 -308 -307 -306 -305 -304 -303 -302 -301 -300 -299 -298 -297 -296 -295 -294 -293 -292 -291 -290 -289 -288 -287 -286 -285 -284 -283 -282 -281 -280 -279 -278 -277 -276 -275 -274 -273 -272 -271 -270 -269 -268 -267 -266 -265 -264 -263 -262 -261 -260 -259 -258 -257 -256 -255 -254 -253 -252 -251 -250 -249 -248 -247

>CTRG_03458    upstream sequence, from -1000 to -1, size 1000
TTCAATCTAAATTTCCCTCCTTGTTCTTTAAAATACATCATTAAATCTAAATTCTTCGCC
CATGGGACAATTATTGATGTTGTAGATTGTATAATATTAGATAATAACCATCCATAATTA
TTATTATTAAATCCAATTGATAAATCATTTAAATAAGCCGCATATAAATCAAATGATTTT
AAAATAGACCACGGATCCATCTCATGGCATAATTTAACAAAACTTGTAATTATTAAATTA
AAAGCTGACCAATCTTCGTCATATAATGTTGTTATTGATGATGGGATGGATTTAGCATTA
TAAATTATCGAAATATATTTATTTTCCTGTGGGTTTATTGATAGTAGACGAGTCAATTCT
TGGATTTTTAAATTGTTATCTGTTATACTATATGTTTGGTTGATCTCATTTATAAATTTC
ATCAAACTCATTCTGAATTAGTGTTACCAGTAGCCTGGTTGTCCTTGCTGTTGTTGTTTT
TGATTATAACAAAGTTGGTGATAATTTTGAATTTTCCAAAGATGTTTCAAAATTCAACCC
AAAAGAAAAAAAAAAATCACCACGAAAAAAAAAGTCAGCAAATTTTTCAATCACCAGTAT
CAACTAAACACCCCTATAAGGACAAATGGCATCAGTTACACCAAGAAGATCAGGTCCACC
TAGTGGGATACTATCCAAGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNpan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>N/>>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>NNpan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>NN
NNCAAATATTCCAATAACATCAAGAAACAATAAATTGGTCATTAGATTATTACCACCATC
ATTAACTGAAAGTAATTTTTTAAATCAATTAGCAGAATATTATCCATACCATGCTACTAA
AATTAATCAATTTTATTTTATTCAAGGATCTTATCCAAGGACAAATTTTGAAATACCAAT
TTATTCAAGAGCTTATTTAAATTTTAATAATTTTCAAGAT

Promoter Sequence
Complementary Strand

Consensus
TKYWKHTKKTKHTTTTTKTTKYTTTKWTT: -216 -218 -219 -220 -221 -222 -223 -224 -225 -226 -227 -228 -229 -230 -231 -232 -233 -234 -235 -236 -237 -238 -239 -240 -241 -242 -243 -244 -245 -246 -247 -248 -249 -250 -251 -252 -253 -254 -255 -256 -257 -258 -259 -260 -261 -262 -263 -264 -265 -266 -267 -268 -269 -270 -271 -272 -273 -274 -275 -276 -277 -278 -279 -280 -281 -282 -283 -284 -285 -286 -287 -288 -289

>CTRG_03458	Upstream Sequence Complementary Strand
AAGTTAGATTTAAAGGGAGGAACAAGAAATTTTATGTAGTAATTTAGATTTAAGAAGCGG
GTACCCTGTTAATAACTACAACATCTAACATATTATAATCTATTATTGGTAGGTATTAAT
AATAATAATTTAGGTTAACTATTTAGTAAATTTATTCGGCGTATATTTAGTTTACTAAAA
TTTTATCTGGTGCCTAGGTAGAGTACCGTATTAAATTGTTTTGAACATTAATAATTTAAT
TTTCGACTGGTTAGAAGCAGTATATTACAACAATAACTACTACCCTACCTAAATCGTAAT
ATTTAATAGCTTTATATAAATAAAAGGACACCCAAATAACTATCATCTGCTCAGTTAAGA
ACCTAAAAATTTAACAATAGACAATATGATATACAAACCAACTAGAGTAAATATTTAAAG
TAGTTTGAGTAAGACTTAATCACAATGGTCATCGGACCAACAGGAACGACAACAACAAAA
ACTAATATTGTTTCAACCACTATTAAAACTTAAAAGGTTTCTACAAAGTTTTAAGTTGGG
TTTTCTTTTTTTTTTTAGTGGTGCTTTTTTTTTCAGTCGTTTAAAAAGTTAGTGGTCATA
GTTGATTTGTGGGGATATTCCTGTTTACCGTAGTCAATGTGGTTCTTCTAGTCCAGGTGG
ATCACCCTATGATAGGTTCTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNpan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>N/>>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>N>NNpan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Npan>Nan>N
NNGTTTATAAGGTTATTGTAGTTCTTTGTTATTTAACCAGTAATCTAATAATGGTGGTAG
TAATTGACTTTCATTAAAAAATTTAGTTAATCGTCTTATAATAGGTATGGTACGATGATT
TTAATTAGTTAAAATAAAATAAGTTCCTAGAATAGGTTCCTGTTTAAAACTTTATGGTTA
AATAAGTTCTCGAATAAATTTAAAATTATTAAAAGTTCTA